Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene51299 SustainPine v3.0 577
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.85697e-41
Putative C-terminus
sp_v3.0_unigene55622 SustainPine v3.0 154
• AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 4.0e-14
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56135 SustainPine v3.0 261
• AutoFact: putative 40S ribosomal protein S9 [Artemisia annua] 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.064e-34
Putative C-terminus
sp_v3.0_unigene57451 SustainPine v3.0 277
• AutoFact: 40S ribosomal protein S4 n=1 Tax=Prunus armeniaca RepID=RS4_PRUAR 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 1.757e-20
Internal
sp_v3.0_unigene58093 SustainPine v3.0 367
• AutoFact: tyrS tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|AAF32473.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] dbj|BAD95182.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|ABK32110.1| At3g02660 [Arabidopsis thaliana] gb|AEE73845. 2.0e-40
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene59113 SustainPine v3.0 205
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 2.0e-15
• FL-Next: sp=RNA pseudourine synthase 7; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: RNA-uridine isomerase 7 1.318e-09
Internal
sp_v3.0_unigene62424 SustainPine v3.0 164
• AutoFact: ORF76a n=1 Tax=Pinus koraiensis RepID=Q85X15_PINKO 5.0e-13
• FL-Next: tr=ORF76a; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
• Sma3: ORF76a 9.26e-06
C-terminus
sp_v3.0_unigene64077 SustainPine v3.0 264
• AutoFact: tyrS tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|AAF32473.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] dbj|BAD95182.1| putative tyrosyl-tRNA synthetase [Arabidopsis thaliana] gb|ABK32110.1| At3g02660 [Arabidopsis thaliana] gb|AEE73845. 1.0e-26
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene65950 SustainPine v3.0 117
• AutoFact: 40S ribosomal protein S9 [Catharanthus roseus] 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 4.911e-20
Internal
sp_v3.0_unigene66276 SustainPine v3.0 377
• AutoFact: RNA-binding S4 domain-containing protein [Arabidopsis thaliana] gb|AAL24321.1| Unknown protein [Arabidopsis thaliana] gb|AAN65106.1| Unknown protein [Arabidopsis thaliana] gb|AAO00774.1| Unknown protein [Arabidopsis thaliana] gb|AAP42730.1| At1g53120 [Ara 8.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene67040 SustainPine v3.0 270
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene67987 SustainPine v3.0 199
• AutoFact: putative ribosomal-like protein [Atropa belladonna] 6.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene68178 SustainPine v3.0 231
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 6.616e-31
C-terminus
sp_v3.0_unigene68439 SustainPine v3.0 353
• AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene70634 SustainPine v3.0 225
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene72376 SustainPine v3.0 197
• AutoFact: RNA pseudourine synthase 2 [Arabidopsis thaliana] sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb|AEE35790.1| RNA pseu 1.0e-10
• FL-Next: sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene74282 SustainPine v3.0 408
• AutoFact: Pseudouridine synthase family protein n=3 Tax=Arabidopsis RepID=D7LCF4_ARALL 1.0e-21
• FL-Next: tr=Pseudouridine synthase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene74929 SustainPine v3.0 360
• AutoFact: Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit n=3 Tax=Chlamydomonadales RepID=A8JGF8_CHLRE 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 9.80909e-45
C-terminus
sp_v3.0_unigene76513 SustainPine v3.0 279
• AutoFact: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_15 n=1 Tax=Blastocystis hominis RepID=D8M187_BLAHO 4.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.131e-20
Putative C-terminus
sp_v3.0_unigene76543 SustainPine v3.0 301
• AutoFact: Ribosomal family S4e containing protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBCC9 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 2.819e-14
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain