Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene30902 SustainPine v3.0 628
• AutoFact: Putative 40S ribosomal protein RPS9 n=1 Tax=Flustra foliacea RepID=A9UDN8_9BILA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.82169e-44
Complete
sp_v3.0_unigene31138 SustainPine v3.0 691
• AutoFact: 40S ribosomal protein S9, putative n=1 Tax=Pediculus humanus corporis RepID=E0VX17_PEDHC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.24208e-44
Complete
sp_v3.0_unigene31276 SustainPine v3.0 575
• AutoFact: S9 n=1 Tax=Suberites domuncula RepID=Q4KTD3_SUBDO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.10195e-44
C-terminus
sp_v3.0_unigene31419 SustainPine v3.0 646
• AutoFact: 40S ribosomal protein S9 n=1 Tax=Hyacinthus orientalis RepID=Q676Y9_HYAOR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.10195e-44
Complete
sp_v3.0_unigene32262 SustainPine v3.0 467
• AutoFact: S9 ribosomal protein n=1 Tax=Trichoplax adhaerens RepID=B3RPS2_TRIAD 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.58699e-40
N-terminus
sp_v3.0_unigene32602 SustainPine v3.0 639
• AutoFact: Putative 40S ribosomal protein RPS9 n=1 Tax=Flustra foliacea RepID=A9UDN8_9BILA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.68156e-44
Complete
sp_v3.0_unigene33152 SustainPine v3.0 614
• AutoFact: PREDICTED: similar to ribosomal protein S9 isoform 1 n=1 Tax=Ciona intestinalis RepID=UPI000180D308 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 2.24208e-44
Complete
sp_v3.0_unigene33382 SustainPine v3.0 613
• AutoFact: PREDICTED: similar to ribosomal protein S9 isoform 1 n=1 Tax=Ciona intestinalis RepID=UPI000180D308 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 1.4013e-44
Complete
sp_v3.0_unigene34077 SustainPine v3.0 1773
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene34657 SustainPine v3.0 1274
• AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene35140 SustainPine v3.0 1359
• AutoFact: RNA pseudourine synthase 2 [Arabidopsis thaliana] sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb|AEE35790.1| RNA pseu 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 2 4.622e-09
C-terminus
sp_v3.0_unigene35739 SustainPine v3.0 1124
• AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q5M9U0_TOBAC 0.0
• FL-Next: sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein S4 3.55299e-41
Complete
sp_v3.0_unigene36422 SustainPine v3.0 404
• AutoFact: F8L10.3 protein n=2 Tax=Arabidopsis thaliana RepID=Q9LNN6_ARATH 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene36690 SustainPine v3.0 847
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S9 5.46506e-44
Complete
sp_v3.0_unigene38880 SustainPine v3.0 772
• AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RNA-uridine isomerase 7 2.258e-09
Internal
sp_v3.0_unigene39302 SustainPine v3.0 413
• AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene40319 SustainPine v3.0 1331
• AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene43058 SustainPine v3.0 252
• AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 7.0e-36
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene45050 SustainPine v3.0 1247
• AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q5M9U0_TOBAC 0.0
• FL-Next: sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein S4 3.55299e-41
Putative Complete
sp_v3.0_unigene48077 SustainPine v3.0 425
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain