Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: red, far-red light phototransduction

Term: GO:0009585  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1185 SustainPine v3.0 1965
• AutoFact: COP9 signalosome complex subunit 3 [Arabidopsis thaliana] sp|Q8W575.2|CSN3_ARATH RecName: Full=COP9 signalosome complex subunit 3; Short=Signalosome subunit 3; AltName: Full=Protein FUSCA 11 gb|AAL58102.1|AF395059_1 CSN complex subunit 3 [Arabidopsis thal 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: COP9 signalosome complex subunit 3 3.263e-13
Complete
sp_v3.0_unigene1201 SustainPine v3.0 1239
• AutoFact: putative COP9 signalosome complex subunit 2 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: COP9 signalosome complex subunit 2 2.548e-17
C-terminus
sp_v3.0_unigene1529 SustainPine v3.0 1480
• AutoFact: Auxin-regulated protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCH6_CUCME 0.0
• FL-Next: tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine). 0.0
• Sma3: GH3 family protein 3.776e-17
C-terminus
sp_v3.0_unigene1913 SustainPine v3.0 2472
• AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome A 6.172e-19
C-terminus
sp_v3.0_unigene2136 SustainPine v3.0 1621
• AutoFact: [R] COG2319 FOG: WD40 repeat 7.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 8.756e-14
C-terminus
sp_v3.0_unigene2485 SustainPine v3.0 3456
• AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 9.136e-11
Complete
sp_v3.0_unigene2553 SustainPine v3.0 1274
• AutoFact: putative COP9 signalosome complex subunit 2 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: COP9 signalosome complex subunit 2 2.548e-17
C-terminus
sp_v3.0_unigene2821 SustainPine v3.0 1396
• AutoFact: Nucleoside diphosphate kinase n=1 Tax=Ricinus communis RepID=B9RAM1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleoside diphosphate kinase 0.0
Complete
sp_v3.0_unigene3154 SustainPine v3.0 4031
• AutoFact: Phytochrome n=43 Tax=Spermatophyta RepID=PHY_PINSY 0.0
• FL-Next: sp=Phytochrome; Pinus sylvestris (Scots pine). 0.0
• Sma3: Phytochrome 0.0
C-terminus
sp_v3.0_unigene3515 SustainPine v3.0 653
• AutoFact: Phytochrome n=12 Tax=Pinaceae RepID=PHY_PICAB 0.0
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome C 0.0
Internal
sp_v3.0_unigene4020 SustainPine v3.0 976
• AutoFact: putative auxin-regulated protein [Nicotiana glutinosa] 7.0e-31
• FL-Next: tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine). 0.0
• Sma3: GH3 family protein 4.828e-07
N-terminus
sp_v3.0_unigene4075 SustainPine v3.0 1942
• AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 1.052e-13
C-terminus
sp_v3.0_unigene4289 SustainPine v3.0 525
• AutoFact: Os02g0203000 protein n=2 Tax=Oryza sativa RepID=Q0E2Y8_ORYSJ 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HY5 1.887e-18
Putative Complete
sp_v3.0_unigene4654 SustainPine v3.0 259
• AutoFact: R2R3-MYB transcription factor MYB4 n=1 Tax=Picea glauca RepID=A5JYE8_PICGL 6.0e-23
• FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: MYB transcription factor 8.799e-25
N-terminus
sp_v3.0_unigene5236 SustainPine v3.0 2224
• AutoFact: Protein AFR, putative n=1 Tax=Ricinus communis RepID=B9S0Z8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein AFR, putative 1.016e-07
Complete
sp_v3.0_unigene5649 SustainPine v3.0 2812
• AutoFact: gigantea-like protein [Hordeum vulgare] gb|AAW66946.1| gigantea-like protein [Hordeum vulgare subsp. vulgare] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gigantea 1.445e-16
C-terminus
sp_v3.0_unigene6057 SustainPine v3.0 2091
• AutoFact: Helix-loop-helix DNA-binding [Medicago truncatula] 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Helix-loop-helix DNA-binding domain containing protein, expressed 5.729e-08
Complete
sp_v3.0_unigene6623 SustainPine v3.0 1233
• AutoFact: Protein SENSITIVITY TO RED LIGHT REDUCED, putative n=1 Tax=Ricinus communis RepID=B9S4K4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene7398 SustainPine v3.0 2438
• AutoFact: pfam03321, GH3, GH3 auxin-responsive promoter 0.0
• FL-Next: sp=Probable indole-3-acetic acid-amido synthetase GH3.5; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: GH3 family protein 3.032e-17
Complete
sp_v3.0_unigene8077 SustainPine v3.0 1612
• AutoFact: Indole-3-acetic acid-amido synthetase GH3.17, putative n=1 Tax=Ricinus communis RepID=B9RG18_RICCO 0.0
• FL-Next: tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine). 0.0
• Sma3: GH3 family protein 3.698e-26
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain