Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: protein-chromophore linkage

Term: GO:0018298  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene65564 SustainPine v3.0 121
• AutoFact: Chlorophyll a-b binding protein 4, chloroplastic n=3 Tax=Brassicaceae RepID=CA4_ARATH 7.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chlorophyll a/b-binding protein 1.876e-11
Putative C-terminus
sp_v3.0_unigene65571 SustainPine v3.0 231
• AutoFact: Chloroplast light harvesting chlorophyll a/b binding protein (Fragment) n=7 Tax=Pinaceae RepID=Q4VV52_PINST 1.0e-31
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.175e-33
Internal
sp_v3.0_unigene65738 SustainPine v3.0 174
• AutoFact: Light-harvesting complex II protein Lhcb1 n=2 Tax=Magnoliophyta RepID=B9I107_POPTR 2.0e-12
• FL-Next: tr=Chlorophyll a/b binding protein; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
• Sma3: LHCP 1.102e-16
Internal
sp_v3.0_unigene65949 SustainPine v3.0 112
• AutoFact: Chlorophyll a-b binding protein 3C, chloroplastic n=40 Tax=Magnoliophyta RepID=CB2G_SOLLC 8.0e-07
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Internal
sp_v3.0_unigene67612 SustainPine v3.0 234
• AutoFact: Cryptochrome DASH, chloroplastic/mitochondrial n=1 Tax=Solanum lycopersicum RepID=CRYD_SOLLC 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 1.826e-12
Internal
sp_v3.0_unigene68088 SustainPine v3.0 302
• AutoFact: DNA photolyase, putative n=1 Tax=Ricinus communis RepID=B9SPQ6_RICCO 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 1.826e-12
Internal
sp_v3.0_unigene69835 SustainPine v3.0 230
• AutoFact: Phytochrome N (Fragment) n=12 Tax=Pinaceae RepID=Q9FSD5_PINSY 2.0e-14
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Internal
sp_v3.0_unigene71213 SustainPine v3.0 343
• AutoFact: Chlorophyll a-b binding protein of LHCII type III, chloroplastic n=11 Tax=Magnoliophyta RepID=CB23_HORVU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.749e-18
Putative C-terminus
sp_v3.0_unigene71803 SustainPine v3.0 342
• AutoFact: Phytochrome n=1 Tax=Cuscuta pentagona RepID=Q6V7X3_CUSPE 5.0e-11
• FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Phytochrome A 1.573e-08
Internal
sp_v3.0_unigene71907 SustainPine v3.0 376
• AutoFact: Chlorophyll a-b binding protein 3C, chloroplastic n=40 Tax=Magnoliophyta RepID=CB2G_SOLLC 0.0
• FL-Next: tr=Light-harvesting chlorophyll a/b-binding protein of photosystem II; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: LHCP 2.645e-19
Internal
sp_v3.0_unigene71937 SustainPine v3.0 416
• AutoFact: Putative chloroplast chlorophyll A-B binding protein type II (Fragment) n=2 Tax=Andropogoneae RepID=Q0H633_SORBI 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 1.917e-16
C-terminus
sp_v3.0_unigene71945 SustainPine v3.0 353
• AutoFact: chloroplast chlorophyll a/b-binding protein [Agave tequilana] 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 8.372e-24
C-terminus
sp_v3.0_unigene72349 SustainPine v3.0 273
• AutoFact: Similar to gb|J04556 G11A protein from Oryza sativa and contains a PF|00069 Eukaryotic protein kinase domain [Arabidopsis thaliana] 8.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/threonine protein kinase, putative 4.792e-35
Internal
sp_v3.0_unigene73477 SustainPine v3.0 439
• AutoFact: Chlorophyll a-b binding protein type 2 member 2 (Fragment) n=5 Tax=Coniferales RepID=CB22_PINSY 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 3.607e-29
C-terminus
sp_v3.0_unigene73489 SustainPine v3.0 450
• AutoFact: Type II chlorophyll a /b-binding protein n=3 Tax=Pinaceae RepID=Q02070_PINSY 1.0e-22
• FL-Next: tr=Type II chlorophyll a /b-binding protein; Pinus sylvestris (Scots pine). 0.0
Putative N-terminus
sp_v3.0_unigene73700 SustainPine v3.0 397
• AutoFact: Chlorophyll A-B binding protein (CAB), putative n=2 Tax=Magnoliophyta RepID=Q1EPK5_MUSAC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.242e-29
C-terminus
sp_v3.0_unigene73818 SustainPine v3.0 427
• AutoFact: pfam00875, DNA_photolyase, DNA photolyase 2.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome 1 1.244e-21
Internal
sp_v3.0_unigene73878 SustainPine v3.0 404
• AutoFact: Chloroplast light harvesting chlorophyll a/b binding protein (Fragment) n=7 Tax=Pinaceae RepID=Q4VV52_PINST 2.0e-39
• FL-Next: tr=Chlorophyll a/b binding protein; Pinus contorta (Shore pine) (Lodgepole pine). 0.0
• Sma3: LHCP 7.457e-27
Putative C-terminus
sp_v3.0_unigene73942 SustainPine v3.0 438
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 4.655e-24
Putative Complete
sp_v3.0_unigene74194 SustainPine v3.0 289
• AutoFact: chloroplast chlorophyll a/b binding protein [Pachysandra terminalis] 1.0e-38
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.736e-21
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain