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Name: DNA-directed RNA polymerase M, 15kDa subunit, conserved site

Term: IPR019761  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3138 SustainPine v3.0 1188
AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene13215 SustainPine v3.0 1000
AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18587 SustainPine v3.0 1028
AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene22796 SustainPine v3.0 1074
AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Picea sitchensis RepID=D5AAK0_PICSI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase subunit 1.984e-12
Complete
sp_v3.0_unigene26737 SustainPine v3.0 215
AutoFact: DNA-directed RNA polymerase subunit n=7 Tax=Embryophyta RepID=Q2QNM4_ORYSJ 2.0e-27
FL-Next: sp=DNA-directed RNA polymerase subunit; Vitis vinifera (Grape). 0.0
Sma3: DNA-directed RNA polymerase II 14.5 kDa polypeptide 4.89e-08
Internal
sp_v3.0_unigene27748 SustainPine v3.0 1794
AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Picea sitchensis RepID=D5AAK0_PICSI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase subunit 1.984e-12
Complete
sp_v3.0_unigene31193 SustainPine v3.0 518
AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 7.0e-06
FL-Next: sp=DNA-directed RNA polymerase subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: DNA-directed RNA polymerase, subunit C11/M/9 8.285e-06
C-terminus
sp_v3.0_unigene41738 SustainPine v3.0 123
AutoFact: DNA-directed RNA polymerase subunit n=3 Tax=Poaceae RepID=C5YPS4_SORBI 5.0e-14
FL-Next: sp=DNA-directed RNA polymerase subunit; Vitis vinifera (Grape). 0.0
Sma3: DNA-directed RNA polymerase II 14.5 kDa polypeptide 3.74e-08
Putative N-terminus
sp_v3.0_unigene75452 SustainPine v3.0 97
AutoFact: DNA-directed RNA polymerase subunit n=7 Tax=Embryophyta RepID=Q2QNM4_ORYSJ 2.0e-07
FL-Next: tr=Putative uncharacterized protein Sb05g026420; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: DNA-directed RNA polymerase II 14.5 kDa polypeptide 3.448e-08
Internal
sp_v3.0_unigene79110 SustainPine v3.0 433
AutoFact: DNA-directed RNA polymerase subunit n=3 Tax=Andropogoneae RepID=C5YC89_SORBI 2.0e-16
FL-Next: sp=DNA-directed RNA polymerase subunit; Vitis vinifera (Grape). 0.0
Sma3: DNA-directed RNA polymerase II 14.5 kDa polypeptide 4.49e-08
Putative N-terminus
sp_v3.0_unigene144890 SustainPine v3.0 424
AutoFact: DNA-directed RNA polymerase subunit n=3 Tax=Andropogoneae RepID=C5YC89_SORBI 1.4013e-45
FL-Next: sp=DNA-directed RNA polymerase subunit; Vitis vinifera (Grape). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene151493 SustainPine v3.0 387
AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 2.0e-29
FL-Next: sp=DNA-directed RNA polymerase subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Putative Complete
sp_v3.0_unigene151752 SustainPine v3.0 370
AutoFact: DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR 1.0e-23
FL-Next: sp=DNA-directed RNA polymerase subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: DNA-directed RNA polymerase II 14.5 kDa polypeptide 2.847e-12
N-terminus
sp_v3.0_unigene153028 SustainPine v3.0 404
AutoFact: RNA polymerase II core subunit n=1 Tax=Polysphondylium pallidum RepID=D3BKZ5_POLPA 1.0e-29
FL-Next: sp=DNA-directed RNA polymerase subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA-directed RNA polymerase II 14.5 kDa polypeptide 4.565e-12
Putative Complete
sp_v3.0_unigene154104 SustainPine v3.0 470
AutoFact: DNA-directed RNA polymerase II subunit RPB9 n=15 Tax=Diptera RepID=RPB9_DROME 7.0e-26
FL-Next: sp=DNA-directed RNA polymerase subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: At3g16980 5.361e-06
Complete
sp_v3.0_unigene155309 SustainPine v3.0 470
AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Ixodes scapularis RepID=B7PRG9_IXOSC 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-directed RNA polymerase II 14.5 kDa polypeptide 2.847e-12
Complete
sp_v3.0_unigene186994 SustainPine v3.0 326
AutoFact: DNA-directed RNA polymerase subunit n=3 Tax=Andropogoneae RepID=C5YC89_SORBI 6.0e-06
FL-Next: sp=DNA-directed RNA polymerase subunit; Selaginella moellendorffii (Spikemoss). 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain