Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene62158 SustainPine v3.0 248
• AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 2.0e-12
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene62480 SustainPine v3.0 222
• AutoFact: Magnesium chelatase H subunit n=2 Tax=Rosaceae RepID=C1KIZ6_PRUPE 7.0e-16
• FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Oryza sativa subsp. indica (Rice). 0.0
• Sma3: Magnesium-chelatase subunit chlH chloroplast 4.233e-09
Internal
sp_v3.0_unigene62599 SustainPine v3.0 120
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene62638 SustainPine v3.0 307
• AutoFact: 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis tha 3.0e-23
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene63885 SustainPine v3.0 183
• AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAY25448.1| At1g04090 [Arabidopsis thaliana] gb|ABO38755.1| At1g04090 [Arabidopsis thaliana] gb|AEE27655.1| uncharacterized protein [Arabidopsis thaliana] 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene64100 SustainPine v3.0 198
• AutoFact: tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] 4.0e-14
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Sma3: Uncharacterized protein At1g28090.3 5.848e-06
Internal
sp_v3.0_unigene64203 SustainPine v3.0 224
• AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 3.0e-31
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene64396 SustainPine v3.0 128
• AutoFact: putative polyribonucleotide nucleotidyltransferase [Oryza sativa Japonica Group] 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene64467 SustainPine v3.0 149
• AutoFact: Dicer-like protein 4 n=3 Tax=Arabidopsis RepID=DCL4_ARATH 1.0e-10
• FL-Next: sp=Dicer-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Dicer-like 4 3.861e-09
Internal
sp_v3.0_unigene64589 SustainPine v3.0 235
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 5.0e-08
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene65302 SustainPine v3.0 163
• AutoFact: Unassigned protein 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene65700 SustainPine v3.0 254
• AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9RS49_RICCO 9.0e-20
• FL-Next: tr=Lupus la ribonucleoprotein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene67173 SustainPine v3.0 281
• AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like 3 9.643e-09
Internal
sp_v3.0_unigene67294 SustainPine v3.0 377
• AutoFact: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S614_RICCO 6.0e-31
• FL-Next: tr=XPA-binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene67366 SustainPine v3.0 321
• AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 2.0e-06
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: Symplekin, putative 8.285e-06
Internal
sp_v3.0_unigene68064 SustainPine v3.0 217
• AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis t 3.0e-09
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene68483 SustainPine v3.0 373
• AutoFact: 50S ribosomal protein L1 [Arabidopsis thaliana] sp|Q9LY66.1|RK1_ARATH RecName: Full=50S ribosomal protein L1, chloroplastic; AltName: Full=CL1; Flags: Precursor emb|CAB87802.1| chloroplast ribosomal L1-like protein [Arabidopsis thaliana] gb|AAK96640.1| AT 7.00649e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L1, chloroplastic 3.92364e-44
C-terminus
sp_v3.0_unigene68688 SustainPine v3.0 153
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 8.0e-17
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene69563 SustainPine v3.0 181
• AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 5.0e-14
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene69982 SustainPine v3.0 306
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2B4_RICCO 3.0e-17
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain