Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene50893 SustainPine v3.0 181
AutoFact: dicer-like protein [Oryza sativa Indica Group] 8.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 4.387e-16
Internal
sp_v3.0_unigene51977 SustainPine v3.0 301
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene53768 SustainPine v3.0 500
AutoFact: Dicer-like 1b protein [Physcomitrella patens] 1.0e-22
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene54636 SustainPine v3.0 423
AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene55839 SustainPine v3.0 214
AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene56154 SustainPine v3.0 258
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 3.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 4.055e-16
Internal
sp_v3.0_unigene56507 SustainPine v3.0 313
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56602 SustainPine v3.0 453
AutoFact: CHLH1 like Mg protoporphyrin IX chelatase subunit H protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TWL7_PHYPA 0.0
FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Magnesium-chelatase subunit chlH chloroplast 6.042e-09
C-terminus
sp_v3.0_unigene56695 SustainPine v3.0 402
AutoFact: Putative tRNA/rRNA methyltransferase n=3 Tax=Oryza sativa RepID=Q5JKV8_ORYSJ 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene57127 SustainPine v3.0 381
AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene58800 SustainPine v3.0 240
AutoFact: ribonuclease G [Francisella tularensis subsp. holarctica LVS] ref|YP_764259.1| ribonuclease G [Francisella tularensis subsp. holarctica OSU18] ref|ZP_02276037.1| ribonuclease G [Francisella tularensis subsp. holarctica FSC200] ref|YP_001429513.2| ribonucl 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative ribonuclease E 2.032e-09
Internal
sp_v3.0_unigene58815 SustainPine v3.0 437
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Symplekin, putative 9.26e-06
Internal
sp_v3.0_unigene58818 SustainPine v3.0 244
AutoFact: Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase HMPREF1013_04391 n=1 Tax=Bacillus sp. 2_A_57_CT2 RepID=E5WPK4_9BACI 4.0e-25
FL-Next: tr=Putative uncharacterized protein Sb07g027830; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Internal
sp_v3.0_unigene59195 SustainPine v3.0 255
AutoFact: Polyribonucleotide nucleotidyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SI65_RICCO 1.0e-17
FL-Next: tr=Polyribonucleotide nucleotidyltransferase, putative; Ricinus communis (Castor bean). 0.0
Sma3: Polynucleotide phosphorylase 2.613e-08
Internal
sp_v3.0_unigene59920 SustainPine v3.0 374
AutoFact: pfam00588, SpoU_methylase, SpoU rRNA Methylase family 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene60143 SustainPine v3.0 254
AutoFact: tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis thaliana] gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana] gb|AAL32808.1| Unknown protein [Arabidopsis thaliana] gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protei 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene60453 SustainPine v3.0 172
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial n=1 Tax=Medicago truncatula RepID=Q2HTA7_MEDTR 4.0e-19
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Dicer-like protein 3.455e-10
Internal
sp_v3.0_unigene61342 SustainPine v3.0 381
AutoFact: Symplekin, putative n=1 Tax=Ricinus communis RepID=B9SQ20_RICCO 2.0e-15
FL-Next: tr=Symplekin, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene61942 SustainPine v3.0 322
AutoFact: putative endoribonuclease E [Oryza sativa Japonica Group] 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative ribonuclease E 2.076e-09
Internal
sp_v3.0_unigene62095 SustainPine v3.0 213
AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 7.0e-18
FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain