Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene32251 SustainPine v3.0 754
• AutoFact: 60S ribosomal protein L10a n=2 Tax=Salpingoeca sp. ATCC 50818 RepID=F2U9Z3_9EUKA 0.0
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 2.081e-37
Complete
sp_v3.0_unigene32842 SustainPine v3.0 1362
• AutoFact: Ribosomal protein n=8 Tax=Spermatophyta RepID=B7F9R7_ORYSJ 0.0
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 0.0
Complete
sp_v3.0_unigene33054 SustainPine v3.0 552
• AutoFact: putative U2-associated SR140 protein [Oryza sativa Japonica Group] 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene34076 SustainPine v3.0 2112
• AutoFact: CAF protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 3.451e-16
C-terminus
sp_v3.0_unigene34087 SustainPine v3.0 1557
• AutoFact: Similarity to ribonuclease III n=1 Tax=Cryptomeria japonica RepID=Q1XG54_CRYJA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Similarity to ribonuclease III 4.873e-06
Complete
sp_v3.0_unigene34250 SustainPine v3.0 756
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 2.922e-08
C-terminus
sp_v3.0_unigene34290 SustainPine v3.0 2948
• AutoFact: Hepatocellular carcinoma-associated antigen, putative n=1 Tax=Ricinus communis RepID=B9RXI9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene34369 SustainPine v3.0 598
• AutoFact: transcription-coupled DNA repair protein-related; K12867 pre-mRNA-splicing factor SYF1 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene34868 SustainPine v3.0 1570
• AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TPR domain protein 1.122e-08
Putative Complete
sp_v3.0_unigene35270 SustainPine v3.0 518
• AutoFact: Unassigned protein 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene35274 SustainPine v3.0 326
• AutoFact: Unassigned protein
• FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Internal
sp_v3.0_unigene35910 SustainPine v3.0 598
• AutoFact: LA RNA-binding protein n=5 Tax=Arabidopsis RepID=F4K704_ARATH 3.9937e-43
• FL-Next: tr=AT5g21160/T10F18_190; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene36204 SustainPine v3.0 743
• AutoFact: uncharacterized protein [Arabidopsis thaliana] dbj|BAB10058.1| unnamed protein product [Arabidopsis thaliana] gb|AAT41837.1| At5g23850 [Arabidopsis thaliana] dbj|BAD94534.1| putative protein [Arabidopsis thaliana] gb|AED93222.1| uncharacterized protein [A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: KDEL motif-containing protein 1, putative 4.323e-20
C-terminus
sp_v3.0_unigene37491 SustainPine v3.0 525
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene37500 SustainPine v3.0 884
• AutoFact: Magnesium chelatase H subunit n=6 Tax=core eudicotyledons RepID=D5KXY0_VITVI 0.0
• FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Magnesium-chelatase subunit chlH chloroplast 3.335e-09
Internal
sp_v3.0_unigene37564 SustainPine v3.0 975
• AutoFact: KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9RDP6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: KDEL motif-containing protein 1, putative 4.647e-20
Internal
sp_v3.0_unigene37748 SustainPine v3.0 2111
• AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAF82198.1|AC067971_6 Contains similarity to an unknown protein T2J13.180 gi|6522568 from Arabidopsis thaliana BAC T2J13 gb|AL132967. ESTs gb|Z29835 and gb|Z29836 come from this gene gb|AEE28094.1| unchara 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lipopolysaccharide-modifying protein 4.017e-16
Putative Complete
sp_v3.0_unigene37802 SustainPine v3.0 3560
• AutoFact: Pre-mRNA-processing protein prp39, putative n=1 Tax=Ricinus communis RepID=B9SKM7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA-processing protein prp39, putative 3.168e-09
Complete
sp_v3.0_unigene37815 SustainPine v3.0 1392
putative_coding
sp_v3.0_unigene39457 SustainPine v3.0 373
• AutoFact: Poly(A) polymerase, putative n=1 Tax=Ricinus communis RepID=B9T6L0_RICCO 2.0e-12
• FL-Next: tr=Poly(A) polymerase, putative; Ricinus communis (Castor bean). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain