Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene13638 SustainPine v3.0 497
AutoFact: Magnesium chelatase H subunit n=6 Tax=core eudicotyledons RepID=D5KXY0_VITVI 0.0
FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Magnesium-chelatase subunit chlH chloroplast 3.622e-09
Internal
sp_v3.0_unigene13761 SustainPine v3.0 1216
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.025e-12
Complete
sp_v3.0_unigene13828 SustainPine v3.0 660
AutoFact: [J] COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 2.0e-26
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Poly(A) polymerase, putative 3.564e-08
Internal
sp_v3.0_unigene13995 SustainPine v3.0 562
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2B4_RICCO 5.0e-33
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene14720 SustainPine v3.0 914
AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] emb|CAB89349.1| rRNA methylase-like protein [Arabidopsis thaliana] dbj|BAF00727.1| rRNA methylase - like protein [Arabidopsis thaliana] gb|AED92155.1| tRNA/rRNA methyltransferase (Sp 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RRNA methylase-like protein 6.546e-10
C-terminus
sp_v3.0_unigene14723 SustainPine v3.0 1368
AutoFact: ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] emb|CAB88283.1| putative protein [Arabidopsis thaliana] gb|AAL49900.1| unknown protein [Arabidopsis thaliana] gb|AEE79812.1| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene15106 SustainPine v3.0 606
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative N-terminus
sp_v3.0_unigene15188 SustainPine v3.0 463
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNU3_RICCO 0.0
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene15204 SustainPine v3.0 846
AutoFact: SWAP/Surp domain-containing protein [Arabidopsis thaliana] gb|AAK64161.1| unknown protein [Arabidopsis thaliana] gb|AAM20098.1| unknown protein [Arabidopsis thaliana] gb|AED96581.1| SWAP/Surp domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene15571 SustainPine v3.0 266
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 2.517e-07
N-terminus
sp_v3.0_unigene17782 SustainPine v3.0 2121
AutoFact: Lupus la ribonucleoprotein, putative n=1 Tax=Ricinus communis RepID=B9SSZ3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lupus la ribonucleoprotein, putative 1.484e-10
Complete
sp_v3.0_unigene17792 SustainPine v3.0 1978
AutoFact: 50S ribosomal protein L1 n=1 Tax=Zea mays RepID=B6TB66_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 50S ribosomal protein L1, chloroplastic 1.092e-27
Complete
sp_v3.0_unigene17934 SustainPine v3.0 1734
AutoFact: RNA methyltransferase family protein [Arabidopsis thaliana] dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana] gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene18062 SustainPine v3.0 670
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene18133 SustainPine v3.0 2070
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene18884 SustainPine v3.0 536
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene20457 SustainPine v3.0 2220
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T4J0_RICCO 0.0
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Complete
sp_v3.0_unigene21388 SustainPine v3.0 990
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 8.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene24041 SustainPine v3.0 531
AutoFact: Unassigned protein 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene24617 SustainPine v3.0 460
AutoFact: large subunit ribosomal protein 1 [Pristionchus sp. 13 RS5231] 6.0e-38
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 8.202e-32
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain