Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene9076 SustainPine v3.0 2615
AutoFact: DUF946 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative Complete
sp_v3.0_unigene9305 SustainPine v3.0 218
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 2.962e-07
Internal
sp_v3.0_unigene9463 SustainPine v3.0 1645
AutoFact: polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana] gb|AAK43866.1|AF370489_1 tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gb|AAN15680.1| tRNA adenylyltransferase-like protein [Arabidopsis thaliana] gb|AEE30266.1| polynuc 5.04467e-44
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene9777 SustainPine v3.0 721
AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.117e-08
Internal
sp_v3.0_unigene10600 SustainPine v3.0 1450
AutoFact: Pre-mRNA splicing factor [Solanum tuberosum] 1.0e-06
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene10622 SustainPine v3.0 1891
AutoFact: FAP multi-domain protein 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene10978 SustainPine v3.0 1298
AutoFact: RNAse E/G-like protein n=8 Tax=Arabidopsis RepID=F4IV66_ARATH 0.0
FL-Next: sp=Ribonuclease E homolog; Porphyra purpurea. Plastid; Chloroplast. 0.0
Sma3: Putative ribonuclease E 2.076e-09
C-terminus
sp_v3.0_unigene11399 SustainPine v3.0 2022
AutoFact: Ribosomal protein n=1 Tax=Picea sitchensis RepID=A9P244_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 0.0
Complete
sp_v3.0_unigene11500 SustainPine v3.0 2848
AutoFact: [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene12038 SustainPine v3.0 2225
AutoFact: uncharacterized protein [Arabidopsis thaliana] dbj|BAB10058.1| unnamed protein product [Arabidopsis thaliana] gb|AAT41837.1| At5g23850 [Arabidopsis thaliana] dbj|BAD94534.1| putative protein [Arabidopsis thaliana] gb|AED93222.1| uncharacterized protein [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: KDEL motif-containing protein 1, putative 6.792e-20
Complete
sp_v3.0_unigene12350 SustainPine v3.0 630
AutoFact: OBP33pep like protein n=3 Tax=Arabidopsis RepID=Q9SUL3_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
N-terminus
sp_v3.0_unigene12425 SustainPine v3.0 606
AutoFact: Contains similarity to RNA adenosine deaminase gene, exon 15 from Homo sapiens gb|U75503. It contains the adenosine-deaminase (editase) domain PF|02137 [Arabidopsis thaliana] 2.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene12623 SustainPine v3.0 621
AutoFact: adenosine-deaminase family/editase family protein [Arabidopsis thaliana] 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene13198 SustainPine v3.0 2122
AutoFact: Splicing factor 4-like protein [Arabidopsis thaliana] sp|Q94C11.1|SUGP1_ARATH RecName: Full=SURP and G-patch domain-containing protein 1-like protein; AltName: Full=Splicing factor 4-like protein; Short=SF4-like protein gb|AAK59860.1| AT3g52120/F4F15_230 0.0
FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 4-like protein 1.818e-09
Complete
sp_v3.0_unigene13241 SustainPine v3.0 815
AutoFact: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Exosome complex exonuclease RRP43 1.777e-09
C-terminus
sp_v3.0_unigene13418 SustainPine v3.0 1505
AutoFact: Poly(A) polymerase, putative n=1 Tax=Ricinus communis RepID=B9T6L0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene13554 SustainPine v3.0 707
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene13575 SustainPine v3.0 1114
AutoFact: XPA-binding protein, putative; K12867 pre-mRNA-splicing factor SYF1 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene13580 SustainPine v3.0 602
AutoFact: Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA 0.0
FL-Next: tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea). 0.0
Sma3: Polynucleotide phosphorylase 5.675e-12
Internal
sp_v3.0_unigene13610 SustainPine v3.0 985
AutoFact: DUF946 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain