Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene157892 SustainPine v3.0 179
AutoFact: 60S ribosomal protein L10a [Lodderomyces elongisporus NRRL YB-4239] gb|EDK46691.1| 60S ribosomal protein L10a [Lodderomyces elongisporus NRRL YB-4239] 8.0e-06
FL-Next: sp=60S ribosomal protein L10a; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Internal
sp_v3.0_unigene158462 SustainPine v3.0 370
AutoFact: Ribosomal protein n=13 Tax=Poaceae RepID=B7F845_ORYSJ 8.0e-30
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 7.844e-32
N-terminus
sp_v3.0_unigene158711 SustainPine v3.0 330
AutoFact: Ribosomal protein n=1 Tax=Zea mays RepID=B4FN28_MAIZE 6.0e-28
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 1.288e-34
N-terminus
sp_v3.0_unigene158718 SustainPine v3.0 445
AutoFact: Ribosomal protein n=1 Tax=Trypanosoma cruzi RepID=E7LJ50_TRYCR 6.0e-40
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 1.159e-35
C-terminus
sp_v3.0_unigene158976 SustainPine v3.0 407
AutoFact: Ribosomal protein n=11 Tax=Euteleostei RepID=A9Z0M8_ONCMA 1.0e-24
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 5.829e-19
C-terminus
sp_v3.0_unigene158996 SustainPine v3.0 545
AutoFact: 60S ribosomal protein L10A n=3 Tax=Neoptera RepID=D1FPL3_CIMLE 0.0
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 7.918e-38
C-terminus
sp_v3.0_unigene160569 SustainPine v3.0 514
AutoFact: Mg-chelatase subunit XANTHA-F n=2 Tax=Hordeum vulgare RepID=Q94C01_HORVD 2.0e-10
FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Magnesium chelatase subunit 1.119e-07
Internal
sp_v3.0_unigene160788 SustainPine v3.0 489
AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis t 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Putative uncharacterized protein F20D10.140 8.285e-06
Internal
sp_v3.0_unigene160859 SustainPine v3.0 458
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene161087 SustainPine v3.0 435
AutoFact: dicer-like protein [Oryza sativa Indica Group] 2.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 2.049e-07
N-terminus
sp_v3.0_unigene161283 SustainPine v3.0 405
AutoFact: 60S ribosomal protein L1, putative n=1 Tax=Theileria parva RepID=Q4N362_THEPA 5.0e-26
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 2.129e-29
N-terminus
sp_v3.0_unigene162191 SustainPine v3.0 369
AutoFact: Ribosomal protein n=6 Tax=Agaricomycetes RepID=B0DAX3_LACBS 5.0e-35
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 1.442e-31
N-terminus
sp_v3.0_unigene162564 SustainPine v3.0 140
AutoFact: Unassigned protein
FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene162871 SustainPine v3.0 218
AutoFact: putative pre-rRNA processing protein, 5' partial [Arabidopsis thaliana] 3.0e-15
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene164320 SustainPine v3.0 344
AutoFact: Os08g0323600 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q6Z0E3_ORYSJ 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene168155 SustainPine v3.0 180
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 6.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene168170 SustainPine v3.0 132
AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 5.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.614e-08
Internal
sp_v3.0_unigene182653 SustainPine v3.0 340
putative_coding
sp_v3.0_unigene184189 SustainPine v3.0 561
AutoFact: pre-mRNA splicing factor, putative 7.0e-38
FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
Internal
sp_v3.0_unigene184740 SustainPine v3.0 586
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RE60_RICCO 4.0e-37
FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain