Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene112413 SustainPine v3.0 305
• AutoFact: Plant RNA cleavage stimulation factor, putative n=1 Tax=Ricinus communis RepID=B9S078_RICCO 8.0e-36
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene113900 SustainPine v3.0 224
• AutoFact: Unassigned protein
• FL-Next: sp=PsbB mRNA maturation factor Mbb1, chloroplastic; Chlamydomonas reinhardtii (Chlamydomonas smithii). 0.0
• Sma3: TPR Domain containing protein, expressed 4.598e-07
Internal
sp_v3.0_unigene113995 SustainPine v3.0 424
• AutoFact: dicer-like protein [Oryza sativa Indica Group] 3.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene114924 SustainPine v3.0 373
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.009e-08
Internal
sp_v3.0_unigene114946 SustainPine v3.0 300
• AutoFact: CAF protein [Arabidopsis thaliana] 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene117281 SustainPine v3.0 182
• AutoFact: XPA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S614_RICCO 1.0e-24
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene119246 SustainPine v3.0 114
• AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 5.0e-08
• FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 0.0
• Sma3: Dicer-like protein 1.312e-13
Internal
sp_v3.0_unigene119844 SustainPine v3.0 519
• AutoFact: Ribosomal protein n=2 Tax=Chlorella RepID=A9XHZ2_CHLVU 0.0
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 8.709e-38
C-terminus
sp_v3.0_unigene122547 SustainPine v3.0 351
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Dicer-like protein 7.796e-10
Internal
sp_v3.0_unigene123103 SustainPine v3.0 373
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene123820 SustainPine v3.0 122
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEE0_RICCO 5.0e-09
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
• Sma3: TRP-185 like protein 6.823e-06
Internal
sp_v3.0_unigene127421 SustainPine v3.0 609
• AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene127645 SustainPine v3.0 504
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T2B4_RICCO 3.0e-25
• FL-Next: tr=RNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene127671 SustainPine v3.0 449
• AutoFact: DUF946 domain containing protein 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene128081 SustainPine v3.0 821
• AutoFact: Ribosomal protein (Fragment) n=7 Tax=Spermatophyta RepID=D7TJ68_VITVI 0.0
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 8.709e-38
Complete
sp_v3.0_unigene129054 SustainPine v3.0 361
• AutoFact: DUF946 domain containing protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene129105 SustainPine v3.0 402
• AutoFact: RNAse E/G-like protein [Arabidopsis thaliana] gb|AAM13212.1| putative ribonuclease E [Arabidopsis thaliana] gb|AAP68232.1| At2g04270 [Arabidopsis thaliana] gb|AEC05814.1| RNAse E/G-like protein [Arabidopsis thaliana] 4.06377e-44
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Putative ribonuclease E 2.076e-09
Internal
sp_v3.0_unigene129244 SustainPine v3.0 651
• AutoFact: KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9RC92_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: KDEL motif-containing protein 1, putative 3.329e-20
Internal
sp_v3.0_unigene129728 SustainPine v3.0 624
• AutoFact: pre-mRNA-processing factor 39 [Arabidopsis thaliana] gb|AAL07170.1| unknown protein [Arabidopsis thaliana] gb|AAM14126.1| unknown protein [Arabidopsis thaliana] gb|AAM65430.1| unknown [Arabidopsis thaliana] gb|AEE27652.1| pre-mRNA-processing factor 39 [Ar 7.0e-22
• FL-Next: tr=Pre-mRNA-processing factor; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene130833 SustainPine v3.0 389
• AutoFact: Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain