Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene79785 SustainPine v3.0 332
AutoFact: splicing factor 3A subunit 1 [Arabidopsis thaliana] ref|NP_001117289.1| splicing factor 3A subunit 1 [Arabidopsis thaliana] sp|Q8RXF1.2|SF3A1_ARATH RecName: Full=Probable splicing factor 3A subunit 1 dbj|BAE98583.1| putative splicing factor [Arabidopsis t 5.0e-16
FL-Next: sp=Probable splicing factor 3A subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79829 SustainPine v3.0 275
AutoFact: DUF946 domain containing protein 2.0e-35
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene80303 SustainPine v3.0 175
AutoFact: Endoribonuclease Dicer homolog 2 n=2 Tax=Arabidopsis thaliana RepID=DCL2_ARATH 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 1.464e-13
Internal
sp_v3.0_unigene80317 SustainPine v3.0 205
AutoFact: polynucleotide phosphorylase [Pisum sativum] 1.0e-12
FL-Next: tr=Putative uncharacterized protein Sb02g003900; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: Putative polynucleotide phosphorylase 1.439e-08
Internal
sp_v3.0_unigene82435 SustainPine v3.0 361
AutoFact: FAP multi-domain protein 2.0e-17
Sma3: Putative glycine-rich cell wall structural protein 6.895e-10
coding
sp_v3.0_unigene83895 SustainPine v3.0 210
AutoFact: Drf_FH1 multi-domain protein 2.0e-11
coding
sp_v3.0_unigene86311 SustainPine v3.0 236
AutoFact: spliceosome associated protein, putative; K12825 splicing factor 3A subunit 1 0.0001
coding
sp_v3.0_unigene93722 SustainPine v3.0 1484
AutoFact: KDEL motif-containing protein 1, putative n=1 Tax=Ricinus communis RepID=B9R9B3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: KDEL motif-containing protein 1, putative 6.352e-20
C-terminus
sp_v3.0_unigene93874 SustainPine v3.0 1162
AutoFact: Magnesium chelatase H subunit n=6 Tax=core eudicotyledons RepID=D5KXY0_VITVI 0.0
FL-Next: sp=Magnesium-chelatase subunit ChlH, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Magnesium-chelatase subunit chlH chloroplast 3.335e-09
Internal
sp_v3.0_unigene94123 SustainPine v3.0 845
AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 5.00264e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like protein 3.916e-13
C-terminus
sp_v3.0_unigene94229 SustainPine v3.0 561
AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis t 9.0e-15
FL-Next: tr=tRNA/rRNA methyltransferase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Sma3: Putative uncharacterized protein At4g38020/F20D10_140 7.31e-06
N-terminus
sp_v3.0_unigene94368 SustainPine v3.0 628
AutoFact: adenosine-deaminase family/editase family protein [Arabidopsis thaliana] 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene94659 SustainPine v3.0 610
AutoFact: polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana] emb|CAB43864.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB43865.1| polynucleotide phosphorylase [Arabidopsis thaliana] emb|CAB87625.1| polynucleotide phosphorylase [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Polyribonucleotide nucleotidyltransferase, putative 2.802e-08
Internal
sp_v3.0_unigene94912 SustainPine v3.0 553
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene95370 SustainPine v3.0 594
AutoFact: symplekin [Arabidopsis thaliana] emb|CAB81923.1| putative protein [Arabidopsis thaliana] gb|AED90339.1| symplekin [Arabidopsis thaliana] 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene95450 SustainPine v3.0 484
AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 2.0e-39
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene96087 SustainPine v3.0 2015
AutoFact: tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb|AED92812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: TPR domain protein 1.327e-08
Putative Complete
sp_v3.0_unigene96311 SustainPine v3.0 679
AutoFact: putative translation releasing factor 2 [Cucumis sativus] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Peptide chain release factor 2, putative 1.218e-08
C-terminus
sp_v3.0_unigene97265 SustainPine v3.0 596
AutoFact: tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Poly(A) polymerase, putative 3.223e-08
Internal
sp_v3.0_unigene97461 SustainPine v3.0 491
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain