Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: cytoskeleton

Term: GO:0005856  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene139072 SustainPine v3.0 379
AutoFact: peroxisome biogenesis protein PEX1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cell division protease ftsH homolog 9.593e-11
Internal
sp_v3.0_unigene141861 SustainPine v3.0 361
AutoFact: Polyubiquitin (Fragment) n=1 Tax=Lemna minor RepID=Q6B444_LEMMI 2.0e-17
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
C-terminus
sp_v3.0_unigene143009 SustainPine v3.0 231
AutoFact: Altered response to gravity (Arg1), plant, putative n=1 Tax=Ricinus communis RepID=B9S2J6_RICCO 5.0e-25
FL-Next: sp=Chaperone protein dnaJ 15; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chaperone protein dnaJ 16 9.358e-09
Internal
sp_v3.0_unigene143731 SustainPine v3.0 1128
AutoFact: Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH 0.0
FL-Next: tr=Actin; Picea rubens (Red spruce) (Picea australis). 0.0
Sma3: Actin 0.0
C-terminus
sp_v3.0_unigene144340 SustainPine v3.0 265
AutoFact: Actin, putative n=1 Tax=Ricinus communis RepID=B9SXZ4_RICCO 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Actin 1.778e-27
C-terminus
sp_v3.0_unigene145649 SustainPine v3.0 117
AutoFact: Actin (Fragment) n=3 Tax=Bonamia ostreae RepID=A9J0A9_9EUKA 1.0e-05
FL-Next: tr=Actin; Picea rubens (Red spruce) (Picea australis). 0.0
Internal
sp_v3.0_unigene145806 SustainPine v3.0 442
AutoFact: Actin-like protein (Fragment) n=6 Tax=Magnoliophyta RepID=E5L4N8_ONCHC 0.0
FL-Next: tr=Actin; Picea rubens (Red spruce) (Picea australis). 0.0
Sma3: Actin-2 1.064e-06
Internal
sp_v3.0_unigene145871 SustainPine v3.0 371
AutoFact: Actin, putative n=1 Tax=Ricinus communis RepID=B9SXZ4_RICCO 2.0e-31
FL-Next: tr=Actin; Picea rubens (Red spruce) (Picea australis). 0.0
Sma3: Actin 2.087e-24
Putative C-terminus
sp_v3.0_unigene145892 SustainPine v3.0 335
AutoFact: Actin (Fragment) n=1 Tax=Gladiolus hybrid cultivar RepID=Q6L655_9ASPA 3.0e-26
FL-Next: tr=Actin; Picea rubens (Red spruce) (Picea australis). 0.0
Sma3: Actin 3.637e-17
Internal
sp_v3.0_unigene145912 SustainPine v3.0 359
AutoFact: Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Actin 4.973e-21
C-terminus
sp_v3.0_unigene146037 SustainPine v3.0 443
AutoFact: Actin, putative n=2 Tax=core eudicotyledons RepID=B9SXZ5_RICCO 0.0
FL-Next: tr=Actin; Picea rubens (Red spruce) (Picea australis). 0.0
Sma3: Actin-1 1.35e-09
N-terminus
sp_v3.0_unigene146177 SustainPine v3.0 389
AutoFact: Actin (Fragment) n=2 Tax=core eudicotyledons RepID=E3UU95_9ROSI 6.02558e-44
FL-Next: tr=Actin; Picea rubens (Red spruce) (Picea australis). 0.0
Misassembled
sp_v3.0_unigene147488 SustainPine v3.0 124
AutoFact: [O] COG5272 Ubiquitin 1.0e-12
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative C-terminus
sp_v3.0_unigene148225 SustainPine v3.0 380
AutoFact: Unassigned protein
FL-Next: sp=SCAR-like protein 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene149315 SustainPine v3.0 88
AutoFact: RecName: Full=Cell division cycle protein 48 homolog; AltName: Full=Valosin-containing protein homolog; Short=VCP gb|AAA80587.1| valosin-containing protein [Glycine max] gb|ABC87759.1| plamsma membrane-associated AAA-ATPase [Glycine max] 1.0e-08
FL-Next: sp=Cell division cycle protein 48 homolog; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Cell division cycle protein 48 homolog 6.433e-08
Internal
sp_v3.0_unigene150261 SustainPine v3.0 369
AutoFact: PREDICTED: similar to valosin containing protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5268 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cell division cycle protein 48 1.279e-14
Putative C-terminus
sp_v3.0_unigene150350 SustainPine v3.0 325
AutoFact: ARP2/3 complex 20 kDa subunit [Neurospora crassa OR74A] ref|XP_003349024.1| hypothetical protein SMAC_06801 [Sordaria macrospora k-hell] gb|EAA36313.1| ARP2/3 complex 20 kDa subunit [Neurospora crassa OR74A] emb|CBI54822.1| unnamed protein product [Sordar 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene150365 SustainPine v3.0 354
AutoFact: Actin (Fragment) n=1 Tax=Enchytraeus japonensis RepID=B6RNM7_9ANNE 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Actin 1.084e-23
C-terminus
sp_v3.0_unigene150368 SustainPine v3.0 254
AutoFact: Actin-like protein n=2 Tax=Dictyosteliida RepID=F4PRV3_9MYCE 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Actin-related protein 3 5.207e-13
Putative C-terminus
sp_v3.0_unigene150487 SustainPine v3.0 504
AutoFact: Transitional endoplasmic reticulum ATPase TER94 n=7 Tax=Endopterygota RepID=D6WTD3_TRICA 1.96182e-44
FL-Next: sp=Cell division cycle protein 48 homolog; Capsicum annuum (Bell pepper). 0.0
Sma3: Cell division cycle protein 48 homolog 6.301e-12
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain