Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3639 SustainPine v3.0 1351
AutoFact: Putative wuschel homeobox protein WOX8/9 n=1 Tax=Picea abies RepID=D5LMH9_PICAB 0.0
FL-Next: tr=Putative wuschel homeobox protein WOX8/9; Picea abies (Norway spruce) (Picea excelsa). 0.0
Complete
sp_v3.0_unigene3713 SustainPine v3.0 3726
AutoFact: PREDICTED: similar to cytokinin receptor 1 n=1 Tax=Vitis vinifera RepID=UPI00019828F5 0.0
FL-Next: sp=Phytochrome; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histidine kinase 2.911e-31
C-terminus
sp_v3.0_unigene3715 SustainPine v3.0 1742
AutoFact: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase 9.128e-19
C-terminus
sp_v3.0_unigene3747 SustainPine v3.0 1961
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene3753 SustainPine v3.0 3829
AutoFact: enhancer of zeste-like 1 [Zea mays] 0.0
FL-Next: sp=Histone-lysine N-methyltransferase EZ1; Zea mays (Maize). 0.0
Sma3: Enhancer of zeste, ezh, putative 1.79e-08
Complete
sp_v3.0_unigene3761 SustainPine v3.0 2349
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SRS4_RICCO 0.0
FL-Next: sp=B3 domain-containing protein Os07g0563300; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene3780 SustainPine v3.0 2994
AutoFact: homeodomain protein HOX3 [Gossypium hirsutum] 0.0
FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Homeobox protein, putative 7.562e-18
Complete
sp_v3.0_unigene3809 SustainPine v3.0 1437
AutoFact: homeodomain protein HB2 [Populus tomentosa] 0.0
FL-Next: sp=WUSCHEL-related homeobox 8; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: WUSCHEL-related homeobox 14 3.401e-08
Complete
sp_v3.0_unigene3812 SustainPine v3.0 1428
AutoFact: protein AGAMOUS-like 65 [Arabidopsis thaliana] gb|AAN37407.1| MADS-box protein AGL65 [Arabidopsis thaliana] gb|AEE29758.1| protein AGAMOUS-like 65 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative MADS-domain transcription factor 3.821e-06
Complete
sp_v3.0_unigene3841 SustainPine v3.0 1836
AutoFact: Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKZ9_PHYPA 0.0
FL-Next: sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Transcription initiation factor TFIID, subunit TAF1 4.823e-09
Internal
sp_v3.0_unigene3864 SustainPine v3.0 2466
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Sma3: Recombination signal sequence recognition protein 1 5.23e-17
Complete
sp_v3.0_unigene3875 SustainPine v3.0 2496
AutoFact: Transcription factor RF2a, putative n=1 Tax=Ricinus communis RepID=B9T452_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3886 SustainPine v3.0 1314
AutoFact: Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI 0.0
FL-Next: tr=Response regulator 1; Pinus pinea (Italian stone pine). 0.0
Sma3: Type-a response regulator 1.071e-38
Complete
sp_v3.0_unigene3891 SustainPine v3.0 1848
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 0.0
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Sma3: Recombination signal sequence recognition protein 1 5.599e-17
N-terminus
sp_v3.0_unigene3976 SustainPine v3.0 2520
AutoFact: FtsZ-like protein n=2 Tax=Nicotiana tabacum RepID=Q95DV5_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastid division protein FtsZ 3.514e-27
Complete
sp_v3.0_unigene4030 SustainPine v3.0 1613
AutoFact: transcription factor Pur-alpha 1 [Arabidopsis thaliana] gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] gb|AEC08632.1| transcription factor Pur-alpha 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene4047 SustainPine v3.0 2394
AutoFact: bZIP transcription factor bZIP50 [Glycine max] 0.0
FL-Next: sp=Probable transcription factor PosF21; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene4049 SustainPine v3.0 3369
AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RCZ5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phototropin 2.094e-39
Complete
sp_v3.0_unigene4059 SustainPine v3.0 2661
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] emb|CAB77810.1| putative DNA-binding protein [Arabidopsis thaliana] emb|CAD29664.1| homeodomain protein 14 [Arabidopsis thaliana] gb|ABH04479.1| At4g03250 [Arabidopsis thaliana] 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4075 SustainPine v3.0 1942
AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 1.052e-13
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain