Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2272 SustainPine v3.0 1125
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z9_MALDO 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.535e-33
N-terminus
sp_v3.0_unigene2286 SustainPine v3.0 1232
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0T3_RICCO 4.0e-32
FL-Next: sp=Dof zinc finger protein DOF2.3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dof zinc finger protein 3.167e-11
Complete
sp_v3.0_unigene2290 SustainPine v3.0 1507
AutoFact: GATA transcription factor 12 n=2 Tax=Arabidopsis thaliana RepID=GAT12_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GATA zinc finger family protein 8.923e-18
Complete
sp_v3.0_unigene2301 SustainPine v3.0 4162
AutoFact: Pseudo response regulator n=3 Tax=Populus RepID=B9HM08_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudo-response regulator 59 homologue 6.743e-09
Complete
sp_v3.0_unigene2326 SustainPine v3.0 1690
AutoFact: putative AP2 domain transcription factor [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 0.0
Sma3: AP2 domain-containing transcription factor 0.0
Complete
sp_v3.0_unigene2336 SustainPine v3.0 587
AutoFact: FAP multi-domain protein 2.0e-15
Sma3: Anther-specific proline rich protein 1.837e-06
coding
sp_v3.0_unigene2385 SustainPine v3.0 2196
AutoFact: transcription factor bHLH30 [Arabidopsis thaliana] sp|Q9S7Y1.1|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 3.593e-06
Putative C-terminus
sp_v3.0_unigene2400 SustainPine v3.0 873
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSC2_RICCO 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative anthocyanin transcriptional regulator 7.314e-11
Putative Complete
sp_v3.0_unigene2454 SustainPine v3.0 2940
AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase 3; Zea mays (Maize). 0.0
Sma3: Cytosine-specific methyltransferase 1.644e-28
C-terminus
sp_v3.0_unigene2485 SustainPine v3.0 3456
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 9.136e-11
Complete
sp_v3.0_unigene2504 SustainPine v3.0 2351
AutoFact: SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWI/SNF transcription activation complex subunit 4.502e-14
Complete
sp_v3.0_unigene2530 SustainPine v3.0 1864
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L0Z9_MALDO 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 9.81e-18
Complete
sp_v3.0_unigene2549 SustainPine v3.0 1984
AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group 2.48e-09
Complete
sp_v3.0_unigene2640 SustainPine v3.0 3025
AutoFact: TPA_inf: WRKY transcription factor 29 [Oryza sativa (japonica cultivar-group)] gb|EAZ02533.1| hypothetical protein OsI_24642 [Oryza sativa Indica Group] 3.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WRKY transcription factor, putative 3.559e-11
Complete
sp_v3.0_unigene2660 SustainPine v3.0 1486
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 5.0e-10
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcriptional corepressor LEUNIG 1.005e-07
N-terminus
sp_v3.0_unigene2667 SustainPine v3.0 3972
AutoFact: Homeodomain protein HB2 n=1 Tax=Picea abies RepID=Q8S555_PICAB 0.0
FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Homeodomain protein HB2 0.0
Complete
sp_v3.0_unigene2703 SustainPine v3.0 3503
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2726 SustainPine v3.0 1431
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L102_MALDO 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 5.19882e-43
Complete
sp_v3.0_unigene2732 SustainPine v3.0 1569
AutoFact: Transcriptional adapter ADA2 n=9 Tax=Poaceae RepID=TADA2_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase complex component 2.737e-15
C-terminus
sp_v3.0_unigene2770 SustainPine v3.0 1358
AutoFact: NAC protein 1 n=2 Tax=Elaeis guineensis RepID=Q2XQF5_ELAGV 0.0
FL-Next: sp=NAC domain-containing protein 68; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain