Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene209112 SustainPine v3.0 300
AutoFact: Putative MADS box transcription factor PrMADS7 n=1 Tax=Pinus radiata RepID=O24491_PINRA 2.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MADS-box transcription factor 6.341e-20
Putative N-terminus
sp_v3.0_unigene209203 SustainPine v3.0 579
AutoFact: Putative MADS box transcription factor PrMADS4 n=1 Tax=Pinus radiata RepID=O24488_PINRA 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene209222 SustainPine v3.0 282
AutoFact: CCR4-NOT transcription complex subunit 6 n=1 Tax=Zea mays RepID=B6SJQ2_MAIZE 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene209302 SustainPine v3.0 670
AutoFact: Ethylene-responsive element binding factor-like protein n=5 Tax=Picea sitchensis RepID=E0ZGY9_PICSI 3.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 2.114e-34
N-terminus
sp_v3.0_unigene209306 SustainPine v3.0 473
AutoFact: Trypan_PARP multi-domain protein 4.0e-17
Sma3: Putative glycine rich protein 5.722e-25
coding
sp_v3.0_unigene209368 SustainPine v3.0 201
AutoFact: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9IKF6_POPTR 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RAP2-like protein 1.242e-17
N-terminus
sp_v3.0_unigene209455 SustainPine v3.0 446
AutoFact: Putative MADS domain transcription factor GGM11 n=1 Tax=Gnetum gnemon RepID=Q9XGJ6_GNEGN 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MADS box protein 2.68e-19
N-terminus
sp_v3.0_unigene209585 SustainPine v3.0 933
AutoFact: Putative MADS box transcription factor PrMADS9 n=1 Tax=Pinus radiata RepID=O24487_PINRA 0.0
FL-Next: tr=Putative MADS box transcription factor PrMADS9; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: AGAMOUS-like protein 6.041e-19
N-terminus
sp_v3.0_unigene209650 SustainPine v3.0 296
AutoFact: putative MADS box transcription factor PrMADS9 [Pinus radiata] 7.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MADS-box protein 1.437e-12
N-terminus
sp_v3.0_unigene209687 SustainPine v3.0 588
AutoFact: Mini zinc finger 1 n=1 Tax=Welwitschia mirabilis RepID=B0LK08_WELMI 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ZF-HD homeobox protein 4.7e-16
Putative Complete
sp_v3.0_unigene209691 SustainPine v3.0 823
AutoFact: Plastidic phosphate translocator-like protein1 n=1 Tax=Mesembryanthemum crystallinum RepID=Q59IV6_MESCR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Plastidic phosphate translocator-like protein1 7.451e-11
C-terminus
sp_v3.0_unigene209729 SustainPine v3.0 496
AutoFact: putative MADS box transcription factor PrMADS9 [Pinus radiata] 8.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MADS-box transcription factor 5.914e-14
N-terminus
sp_v3.0_unigene209829 SustainPine v3.0 543
AutoFact: Putative MADS domain transcription factor GGM10 n=1 Tax=Gnetum gnemon RepID=Q9XGJ7_GNEGN 6.0e-25
FL-Next: tr=Putative MADS-box family transcription factor; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: AGAMOUS-like protein 6.252e-28
N-terminus
sp_v3.0_unigene209849 SustainPine v3.0 677
AutoFact: basic helix-loop-helix domain-containing protein [Arabidopsis thaliana] ref|XP_002893369.1| hypothetical protein ARALYDRAFT_472704 [Arabidopsis lyrata subsp. lyrata] dbj|BAC43682.1| unknown protein [Arabidopsis thaliana] gb|AAO42932.1| At1g26948 [Arabidop 7.0e-24
FL-Next: sp=Transcription factor bHLH135; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transcription regulator, putative 9.213e-11
Complete
sp_v3.0_unigene210017 SustainPine v3.0 247
AutoFact: Transcriptional factor TINY, putative n=1 Tax=Ricinus communis RepID=B9RQZ6_RICCO 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 7.8e-30
Putative N-terminus
sp_v3.0_unigene210054 SustainPine v3.0 731
AutoFact: heat shock factor RHSF1 [Oryza sativa Japonica Group] 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat stress transcription factor A-6a 6.214e-08
Internal
sp_v3.0_unigene210116 SustainPine v3.0 417
AutoFact: Ethylene-insensitive 3d n=2 Tax=Populus trichocarpa RepID=B9HK87_POPTR 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ethylene signal transcription factor 1.312e-15
N-terminus
sp_v3.0_unigene210135 SustainPine v3.0 388
AutoFact: MYB transcription factor MYB92 [Glycine max] 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MYB1 5.923e-11
Putative N-terminus
sp_v3.0_unigene210238 SustainPine v3.0 865
AutoFact: PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 2.076e-26
C-terminus
sp_v3.0_unigene210246 SustainPine v3.0 535
AutoFact: Putative auxin response factor 2/1/9 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY0_CYCRU 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 3.614e-25
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain