Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, CCHC-type

Term: IPR001878  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2785 SustainPine v3.0 1499
AutoFact: MYB-like transcription factor DIVARICATA [Antirrhinum majus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MYB transcription factor 1.126e-21
Complete
sp_v3.0_unigene2802 SustainPine v3.0 1791
AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arginine/serine-rich splicing factor, putative 1.89e-13
Complete
sp_v3.0_unigene2826 SustainPine v3.0 2704
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 53; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 7 1.011e-10
Complete
sp_v3.0_unigene2916 SustainPine v3.0 379
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 3.0e-32
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Reverse transcriptase 7.098e-36
Internal
sp_v3.0_unigene2970 SustainPine v3.0 2989
AutoFact: [C] COG0584 Glycerophosphoryl diester phosphodiesterase 9.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycerophosphoryl diester phosphodiesterase 2-like protein 6.348e-08
Complete
sp_v3.0_unigene2990 SustainPine v3.0 2315
AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lyase, putative 3.464e-27
Complete
sp_v3.0_unigene3007 SustainPine v3.0 5125
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
FL-Next: sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco). 0.0
Sma3: Gag-Pol polyprotein 6.984e-08
Complete
sp_v3.0_unigene3034 SustainPine v3.0 1713
AutoFact: Putative transcriptional coactivator n=1 Tax=Brassica rapa RepID=Q9AVE8_BRACM 1.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3084 SustainPine v3.0 928
AutoFact: cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] dbj|BAC43097.1| putative receptor-like protein kinase 5 RLK5 [Arabidopsis thaliana] gb|AEE84715.1| cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_278, whole genome shotgun sequence 9.321e-20
C-terminus
sp_v3.0_unigene3178 SustainPine v3.0 1737
AutoFact: zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] emb|CAC05633.1| putative protein [Arabidopsis thaliana] gb|AAM20675.1| putative protein [Arabidopsis thaliana] gb|AAN72214.1| putative protein [Arabidopsis thaliana] gb|AEE77811.1| zinc knuckl 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene3274 SustainPine v3.0 640
AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 6.23199e-41
N-terminus
sp_v3.0_unigene3321 SustainPine v3.0 605
AutoFact: FAP multi-domain protein 5.0e-20
Sma3: Glycine-rich protein 5.632e-13
coding
sp_v3.0_unigene3331 SustainPine v3.0 1374
AutoFact: Bidirectional sugar transporter SWEET1 n=2 Tax=Arabidopsis RepID=SWET1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Seven-transmembrane-domain protein 1 5.351e-21
Complete
sp_v3.0_unigene3357 SustainPine v3.0 780
AutoFact: Receptor-like protein kinase 4 n=2 Tax=Arabidopsis RepID=F4JH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: S-receptor kinase, putative 4.235e-16
Internal
sp_v3.0_unigene3549 SustainPine v3.0 1840
AutoFact: CemA-like proton extrusion protein-like protein [Arabidopsis thaliana] gb|AAL85996.1| unknown protein [Arabidopsis thaliana] gb|AAP04130.1| unknown protein [Arabidopsis thaliana] dbj|BAD43184.1| unknown protein [Arabidopsis thaliana] dbj|BAD43308.1| unkno 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene3668 SustainPine v3.0 860
AutoFact: Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: HAT family dimerisation domain containing protein 1.788e-13
Putative C-terminus
sp_v3.0_unigene3679 SustainPine v3.0 4014
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 5'->3' exoribonuclease, putative 8.416e-16
Complete
sp_v3.0_unigene3690 SustainPine v3.0 3137
AutoFact: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9S1L9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Replication factor A 1, rfa1, putative 2.794e-12
Complete
sp_v3.0_unigene3697 SustainPine v3.0 1544
AutoFact: Eukaryotic translation initiation factor 3 subunit G n=1 Tax=Picea sitchensis RepID=A9NNT0_PICSI 0.0
FL-Next: sp=Eukaryotic translation initiation factor 3 subunit G; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3772 SustainPine v3.0 1693
AutoFact: DnaJ homologue [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chaperone protein DNAj, putative 1.919e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain