Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Like-Sm ribonucleoprotein (LSM) domain

Term: IPR001163  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene162428 SustainPine v3.0 417
AutoFact: BTB-POZ and math domain-containing protein [Arabidopsis thaliana] sp|Q8L765.1|BPM1_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 1; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 1; Short=AtBPM1 gb|AAM97116.1| putative protein [Arabidopsis 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Speckle-type POZ protein, putative 2.826e-09
Internal
sp_v3.0_unigene163305 SustainPine v3.0 326
AutoFact: RVT_1 domain containing protein 1.0e-14
FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene164322 SustainPine v3.0 165
AutoFact: putative thiamin pyrophosphokinase [Oryza sativa Japonica Group] dbj|BAD53067.1| putative thiamin pyrophosphokinase [Oryza sativa Japonica Group] 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Thiamin pyrophosphokinase 1 1.592e-08
Internal
sp_v3.0_unigene165093 SustainPine v3.0 270
AutoFact: thiamin pyrophosphokinase1 [Arabidopsis thaliana] gb|AAF02878.1|AC009525_12 Unknown protein [Arabidopsis thaliana] gb|AAM62805.1| thiamin pyrophosphokinase, putative [Arabidopsis thaliana] gb|AEE27489.1| thiamin pyrophosphokinase1 [Arabidopsis thaliana] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative thiamin pyrophosphokinase 9.826e-13
Internal
sp_v3.0_unigene165602 SustainPine v3.0 176
AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 3.0e-18
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative N-terminus
sp_v3.0_unigene165633 SustainPine v3.0 453
AutoFact: U6 snRNA-associated Sm-like protein LSm3 [Aspergillus niger CBS 513.88] emb|CAK46655.1| unnamed protein product [Aspergillus niger] 5.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene165662 SustainPine v3.0 507
AutoFact: small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea okayama7#130] gb|EAU91789.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea okayama7#130] 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein, putative 9.935e-09
Putative Complete
sp_v3.0_unigene165766 SustainPine v3.0 437
AutoFact: Small nuclear ribonucleoprotein Sm D3 n=4 Tax=leotiomyceta RepID=B2W6T3_PYRTR 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein, putative 5.671e-13
Putative Complete
sp_v3.0_unigene165841 SustainPine v3.0 176
AutoFact: Related to small nuclear ribonucleoprotein associated protein b n=1 Tax=Sporisorium reilianum RepID=E6ZMM6_9BASI 4.0e-15
FL-Next: sp=Small nuclear ribonucleoprotein-associated protein; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Sma3: Small nuclear ribonucleoprotein-associated protein B 6.823e-06
N-terminus
sp_v3.0_unigene166042 SustainPine v3.0 351
AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
N-terminus
sp_v3.0_unigene166929 SustainPine v3.0 371
AutoFact: Small nuclear ribonucleoprotein Sm D2 n=4 Tax=Pleosporineae RepID=B2WJA1_PYRTR 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein sm d2, putative 3.168e-09
N-terminus
sp_v3.0_unigene166955 SustainPine v3.0 497
AutoFact: pfam01423, LSM, LSM domain 3.0e-13
FL-Next: tr=Glycine rich protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
Complete
sp_v3.0_unigene183065 SustainPine v3.0 646
AutoFact: LSM domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3QWF0_COLGM 2.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein f, putative 6.229e-09
Complete
sp_v3.0_unigene188643 SustainPine v3.0 349
AutoFact: LSM domain-containing protein n=1 Tax=Glomerella graminicola M1.001 RepID=E3Q2L4_COLGM 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene189625 SustainPine v3.0 602
AutoFact: Small nuclear ribonucleoprotein F n=3 Tax=Pleosporineae RepID=B2VQW0_PYRTR 2.8026e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene190042 SustainPine v3.0 149
AutoFact: Cytadhesin_P30 multi-domain protein 2.0e-10
unknown
sp_v3.0_unigene190107 SustainPine v3.0 340
AutoFact: U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Osmerus mordax RepID=C1BKM3_OSMMO 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene191064 SustainPine v3.0 447
AutoFact: small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A] gb|EAA31888.2| small nuclear ribonucleoprotein Sm D2 [Neurospora crassa OR74A] 5.00264e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
Putative Complete
sp_v3.0_unigene191359 SustainPine v3.0 491
AutoFact: small nuclear ribonucleoprotein E [Arabidopsis thaliana] ref|XP_002867355.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp. lyrata] gb|AAM65292.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana] dbj|BAD42875.1| small nucl 5.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small nuclear ribonucleoprotein E 3.573e-12
Complete
sp_v3.0_unigene191461 SustainPine v3.0 547
AutoFact: U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Ectocarpus siliculosus RepID=D7FXS6_ECTSI 5.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain