Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type

Term: IPR006649  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene106598 SustainPine v3.0 496
• AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene110755 SustainPine v3.0 300
• AutoFact: Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Ajellomyces dermatitidis ATCC 18188 RepID=F2TCT1_AJEDE 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
N-terminus
sp_v3.0_unigene116330 SustainPine v3.0 363
• AutoFact: [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
Complete
sp_v3.0_unigene116465 SustainPine v3.0 791
• AutoFact: ATPase [Cryptococcus neoformans var. neoformans JEC21] gb|AAW42236.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene118238 SustainPine v3.0 321
• AutoFact: Probable small nuclear ribonucleoprotein E n=1 Tax=Harpegnathos saltator RepID=E2B6Q5_9HYME 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein E 3.573e-12
Putative Complete
sp_v3.0_unigene126655 SustainPine v3.0 586
• AutoFact: Small nuclear ribonucleoprotein Sm D2 n=2 Tax=Chlamydomonadales RepID=A8I074_CHLRE 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 3.681e-09
C-terminus
sp_v3.0_unigene126771 SustainPine v3.0 836
• AutoFact: small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] emb|CAB83134.1| small nuclear ribonucleoprot 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene127331 SustainPine v3.0 501
• AutoFact: Small nuclear ribonucleoprotein polypeptide G (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D4_HYAOR 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene148137 SustainPine v3.0 490
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 3.00004e-41
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: RNA-directed DNA polymerase (Reverse transcriptase) 9.831e-10
Putative N-terminus
sp_v3.0_unigene150351 SustainPine v3.0 122
• AutoFact: putative small nuclear ribonucleoprotein [Arabidopsis thaliana] gb|AEC06801.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana] 8.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene150750 SustainPine v3.0 236
• AutoFact: PREDICTED: similar to Sm protein G, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A59 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein polypeptide G 4.83e-13
Putative Complete
sp_v3.0_unigene151203 SustainPine v3.0 395
• AutoFact: U6 snRNA-associated Sm-like protein LSm3 n=26 Tax=Euteleostomi RepID=LSM3_HUMAN 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene151436 SustainPine v3.0 306
• AutoFact: small ribonucleoprotein particle protein SmD2 [Drosophila melanogaster] ref|XP_001999257.1| GI23171 [Drosophila mojavensis] ref|XP_002038554.1| GM10560 [Drosophila sechellia] ref|XP_002102358.1| GD19551 [Drosophila simulans] sp|Q9VI10.1|SMD2_DROME RecName 9.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein sm d2, putative 4.755e-09
C-terminus
sp_v3.0_unigene151749 SustainPine v3.0 249
• AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 9.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: snRNP-G 4.361e-09
C-terminus
sp_v3.0_unigene151867 SustainPine v3.0 427
• AutoFact: Small nuclear ribonucleoprotein G n=1 Tax=Phytophthora infestans T30-4 RepID=D0NS89_PHYIT 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein polypeptide G 4.921e-13
Complete
sp_v3.0_unigene152348 SustainPine v3.0 418
• AutoFact: PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Ciona intestinalis RepID=UPI000180CBAF 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Sm-like protein 0.0
Complete
sp_v3.0_unigene152460 SustainPine v3.0 357
• AutoFact: small nuclear ribonucleoprotein homolog [Arabidopsis thaliana] 5.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene152623 SustainPine v3.0 413
• AutoFact: Small nuclear ribonucleoprotein Sm D1 putative n=2 Tax=Oomycetes RepID=F0WMY5_9STRA 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear riboprotein Sm-D1 2.399e-09
Putative Complete
sp_v3.0_unigene152651 SustainPine v3.0 554
• AutoFact: Small nuclear ribonucleoprotein SmD1, putative n=19 Tax=Eurotiomycetidae RepID=Q4WHK1_ASPFU 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein Sm D1 3.707e-12
Complete
sp_v3.0_unigene152660 SustainPine v3.0 456
• AutoFact: [K] COG1958 Small nuclear ribonucleoprotein (snRNP) homolog 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein f, putative 6.913e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain