Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type

Term: IPR006649  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene11616 SustainPine v3.0 1906
• AutoFact: BTB/POZ and M2 domain-containing protein [Arabidopsis thaliana] sp|Q9M8J9.1|BPM2_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 2; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 2; Short=AtBPM2 gb|AAF30312.1|AC018907_12 unknown protein [Ara 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Speckle-type POZ protein 8.432e-19
Complete
sp_v3.0_unigene13076 SustainPine v3.0 1248
• AutoFact: Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana] gb|AAD15345.1| small nuclear riboprotein Sm-D1 [Arabidopsis thaliana] emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis thaliana] gb|AAM61281.1| small nuclear ri 4.2039e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene13858 SustainPine v3.0 5064
• AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Katanin p60 ATPase-containing subunit, putative 3.36e-07
Complete
sp_v3.0_unigene14042 SustainPine v3.0 1509
• AutoFact: Transitional endoplasmic reticulum ATPase-like n=3 Tax=Oryza sativa RepID=Q6YUV9_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AAA-type ATPase family protein, putative, expressed 1.077e-07
C-terminus
sp_v3.0_unigene14612 SustainPine v3.0 475
• AutoFact: Receptor for egg jelly protein 9 n=1 Tax=Strongylocentrotus purpuratus RepID=A2TIR8_STRPU 4.0e-05
• Sma3: Putative snRNP protein 9.837e-09
coding
sp_v3.0_unigene16942 SustainPine v3.0 1046
• AutoFact: small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_973710.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] ref|NP_001078331.1| small nuclear ribonucleoprotein D2 [Arabidopsis thaliana] emb|CAB83134.1| small nuclear ribonucleoprot 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene16992 SustainPine v3.0 1282
• AutoFact: U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] ref|NP_849931.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] gb|AAD24820.1| putative snRNP splicing factor [Arabidopsis thaliana] gb|AAO23652.1| At2g03870 [Arabidopsis tha 3.99931e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18074 SustainPine v3.0 999
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18499 SustainPine v3.0 920
• AutoFact: U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095 and contains a conserved Sm protein PF|01423 motif. EST gb|AI998441 comes from this gene [Arabidopsis th 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18509 SustainPine v3.0 1134
• AutoFact: Sm-like protein [Arabidopsis thaliana] 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene18881 SustainPine v3.0 911
• AutoFact: U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] ref|NP_849931.1| U6 snRNA-associated Sm-like protein LSm7 [Arabidopsis thaliana] gb|AAD24820.1| putative snRNP splicing factor [Arabidopsis thaliana] gb|AAO23652.1| At2g03870 [Arabidopsis tha 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene19060 SustainPine v3.0 584
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 5.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene19506 SustainPine v3.0 1657
• AutoFact: Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ 0.0
• FL-Next: tr=Katanin p60 ATPase-containing subunit, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Putative uncharacterized protein At2g45500 3.608e-07
Complete
sp_v3.0_unigene19682 SustainPine v3.0 504
• AutoFact: Like-Sm ribonucleoprotein-related, core [Medicago truncatula] 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene20175 SustainPine v3.0 1145
• AutoFact: putative Sm protein F [Oryza sativa Japonica Group] dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group] 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene22680 SustainPine v3.0 1410
• AutoFact: Glycine rich protein-like n=4 Tax=Arabidopsis RepID=Q8LAC6_ARATH 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene24710 SustainPine v3.0 484
• AutoFact: LSM domain-containing protein [Dictyostelium discoideum AX4] gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4] 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein, putative 1.041e-12
Complete
sp_v3.0_unigene25456 SustainPine v3.0 843
• AutoFact: DNA mismatch repair protein PMS2 [Arabidopsis thaliana] gb|AAL01156.1| DNA mismatch repair protein [Arabidopsis thaliana] gb|AEE82175.1| DNA mismatch repair protein PMS2 [Arabidopsis thaliana] 3.00018e-42
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene25752 SustainPine v3.0 485
• AutoFact: small nuclear ribonucleoprotein Sm D3 [Homo sapiens] ref|NP_080371.1| small nuclear ribonucleoprotein Sm D3 [Mus musculus] ref|NP_001007839.1| small nuclear ribonucleoprotein Sm D3 [Gallus gallus] ref|NP_001017093.1| small nuclear ribonucleoprotein D3 pol 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small nuclear ribonucleoprotein, putative 6.504e-13
Putative Complete
sp_v3.0_unigene25823 SustainPine v3.0 519
• AutoFact: U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] ref|NP_001031238.1| U6 snRNA-associated Sm-like protein LSm8 [Arabidopsis thaliana] gb|AAL50104.1| At1g65700/F1E22_3 [Arabidopsis thaliana] gb|AAM16215.1| At1g65700/F1E22_3 [Arabidopsis thali 6.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain