Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Double-stranded RNA-binding-like

Term: IPR014720  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene80303 SustainPine v3.0 175
• AutoFact: Endoribonuclease Dicer homolog 2 n=2 Tax=Arabidopsis thaliana RepID=DCL2_ARATH 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 1.464e-13
Internal
sp_v3.0_unigene80416 SustainPine v3.0 136
• AutoFact: Regulatory-associated protein of TOR 1 n=2 Tax=Oryza sativa Japonica Group RepID=RTOR1_ORYSJ 5.0e-07
• FL-Next: sp=Double-stranded RNA-binding protein 3; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene80822 SustainPine v3.0 195
• AutoFact: Fructose-bisphosphate aldolase n=1 Tax=Picea sitchensis RepID=B8LMQ9_PICSI 2.0e-07
• FL-Next: sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fructose-bisphosphate aldolase 0.0
C-terminus
sp_v3.0_unigene81231 SustainPine v3.0 273
• AutoFact: 40S ribosomal protein S2 n=1 Tax=Picea abies RepID=Q9AVU0_PICAB 9.0e-05
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative C-terminus
sp_v3.0_unigene81385 SustainPine v3.0 211
• AutoFact: 40S ribosomal protein S2/30S [Ornithodoros parkeri] 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S2 1.709e-19
Internal
sp_v3.0_unigene81598 SustainPine v3.0 135
• AutoFact: putative helicase [Oryza sativa Japonica Group] 2.0e-10
• FL-Next: tr=ATP-dependent RNA helicase A-like protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene94123 SustainPine v3.0 845
• AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 3.916e-13
C-terminus
sp_v3.0_unigene95611 SustainPine v3.0 480
• AutoFact: regulatory associated protein of mTOR [Arabidopsis thaliana] sp|Q93YQ1.1|RTOR1_ARATH RecName: Full=Regulatory-associated protein of TOR 1; AltName: Full=Protein RAPTOR 1; AltName: Full=Protein RAPTOR 1B; Short=AtRaptor1b gb|AAL24320.1| Unknown protein [Ar 2.0e-06
• FL-Next: sp=Regulatory-associated protein of TOR 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene97269 SustainPine v3.0 1305
• AutoFact: PREDICTED: similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase n=1 Tax=Vitis vinifera RepID=UPI00019851EB 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.094e-34
Internal
sp_v3.0_unigene98541 SustainPine v3.0 377
• AutoFact: dsrm domain containing protein 6.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene99096 SustainPine v3.0 261
• AutoFact: pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.918e-09
Internal
sp_v3.0_unigene99395 SustainPine v3.0 546
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Dicer-like protein 4.58e-20
Internal
sp_v3.0_unigene99561 SustainPine v3.0 709
• AutoFact: Unassigned protein
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene99595 SustainPine v3.0 624
• AutoFact: beta-glucosidase [Arabidopsis thaliana] emb|CAB61946.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gb|AAL32794.1| beta-D-glucan exohydrolase-like protein [Arabidopsis thaliana] gb|AAM13345.1| beta-D-glucan exohydrolase-like protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 5.622e-21
Internal
sp_v3.0_unigene99602 SustainPine v3.0 673
• AutoFact: protein dicer-like 2 [Arabidopsis thaliana] ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana] sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName: Full=Dicer-like protein 2; Short=AtDCL2 gb|AEE73924.1| protein dice 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 6.474e-10
C-terminus
sp_v3.0_unigene101282 SustainPine v3.0 771
• AutoFact: Exo-beta-glucanase n=1 Tax=Lilium longiflorum RepID=Q6UY81_LILLO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Beta-D-glucan exohydrolase-like protein 5.461e-21
C-terminus
sp_v3.0_unigene102098 SustainPine v3.0 615
• AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 3.728e-16
Putative N-terminus
sp_v3.0_unigene102580 SustainPine v3.0 206
• AutoFact: Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TDF6_PHYPA 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gb|AAD20688.1 6.584e-09
N-terminus
sp_v3.0_unigene102590 SustainPine v3.0 192
• AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Double-stranded RNA binding protein 2.195e-12
Internal
sp_v3.0_unigene103424 SustainPine v3.0 304
• AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 1.952e-14
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain