Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene157637 SustainPine v3.0 458
• AutoFact: RAB11B member RAS oncogene family [synthetic construct] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 3.112e-17
N-terminus
sp_v3.0_unigene157687 SustainPine v3.0 389
• AutoFact: GTP-binding nuclear protein Ran n=3 Tax=Tetrahymena RepID=RAN_TETTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 6.433e-08
Internal
sp_v3.0_unigene157758 SustainPine v3.0 367
• AutoFact: GTP-binding nuclear protein Ran n=3 Tax=Caligidae RepID=C1BUI8_9MAXI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding nuclear protein RAN 4.122e-12
Putative N-terminus
sp_v3.0_unigene157767 SustainPine v3.0 392
• AutoFact: Ras-related protein Rab-5A n=7 Tax=Eutheria RepID=RAB5A_PIG 3.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11A 1.03e-11
N-terminus
sp_v3.0_unigene157814 SustainPine v3.0 385
• AutoFact: Small rab-related GTPase n=2 Tax=Chlamydomonadales RepID=A8HN42_CHLRE 3.9937e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab6/RabH-family small GTPase 9.59e-11
N-terminus
sp_v3.0_unigene158083 SustainPine v3.0 385
• AutoFact: GTP-binding protein o-rab1 n=1 Tax=Trichoplax adhaerens RepID=B3RKM7_TRIAD 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 1.213e-15
N-terminus
sp_v3.0_unigene158089 SustainPine v3.0 162
• AutoFact: Ras-related protein Rab-2A, putative n=5 Tax=Metazoa RepID=Q17BP4_AEDAE 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab2/RabB-family small GTPase 4.961e-11
Putative N-terminus
sp_v3.0_unigene158305 SustainPine v3.0 246
• AutoFact: GTP-binding protein of the rab family n=9 Tax=Saccharomycetales RepID=A3LRF3_PICST 8.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 3.395e-11
N-terminus
sp_v3.0_unigene158485 SustainPine v3.0 306
• AutoFact: Ras-like protein Ras1 n=4 Tax=Ustilaginaceae RepID=Q8J133_USTMD 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene158495 SustainPine v3.0 254
• AutoFact: Rab7 family GTPase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZH3_PHYIT 4.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab7/RabG-family small GTPase 4.872e-08
Internal
sp_v3.0_unigene158528 SustainPine v3.0 371
• AutoFact: Rab11 family GTPase putative n=1 Tax=Albugo laibachii Nc14 RepID=F0WXW1_9STRA 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 2.635e-17
N-terminus
sp_v3.0_unigene158553 SustainPine v3.0 336
• AutoFact: Rab7 (Fragment) n=1 Tax=Tetrahymena thermophila RepID=Q9U5G8_TETTH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 9.733e-13
N-terminus
sp_v3.0_unigene158624 SustainPine v3.0 569
• AutoFact: RAS oncogene family member RAB1 n=1 Tax=Amblyomma variegatum RepID=F0J9Z3_AMBVA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 7.815e-20
N-terminus
sp_v3.0_unigene158646 SustainPine v3.0 326
• AutoFact: Rab GTPase n=1 Tax=Polysphondylium pallidum RepID=D3BL86_POLPA 5.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 1.639e-16
N-terminus
sp_v3.0_unigene158811 SustainPine v3.0 259
• AutoFact: GTP-binding protein ypt1 n=1 Tax=Aspergillus niger CBS 513.88 RepID=UPI0001F27511 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 2.892e-18
Putative N-terminus
sp_v3.0_unigene158871 SustainPine v3.0 187
• AutoFact: RAB7 (Fragment) n=1 Tax=Hordeum vulgare RepID=Q3S835_HORVU 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 6.908e-13
Putative N-terminus
sp_v3.0_unigene158893 SustainPine v3.0 323
• AutoFact: Rab GTPase n=1 Tax=Polysphondylium pallidum RepID=D3BU57_POLPA 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene158914 SustainPine v3.0 542
• AutoFact: Rab-type small G protein n=1 Tax=Thalassiosira pseudonana RepID=B8BRY5_THAPS 4.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 3.749e-08
C-terminus
sp_v3.0_unigene158924 SustainPine v3.0 476
• AutoFact: PREDICTED: ras-related protein Rab-4B-like n=1 Tax=Anolis carolinensis RepID=UPI0002039A67 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 1.547e-24
N-terminus
sp_v3.0_unigene159078 SustainPine v3.0 192
• AutoFact: Rab11b protein n=1 Tax=Xenopus laevis RepID=Q66KS9_XENLA 7.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11A 2.299e-15
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain