Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene152987 SustainPine v3.0 334
AutoFact: GTP-binding protein n=2 Tax=Pichia angusta RepID=E7R1T2_PICAD 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ypt1-like rab-type small G protein 4.386e-06
N-terminus
sp_v3.0_unigene153081 SustainPine v3.0 461
AutoFact: Rab GTPase n=1 Tax=Polysphondylium pallidum RepID=D3AWN3_POLPA 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 1.18e-17
Putative C-terminus
sp_v3.0_unigene153093 SustainPine v3.0 329
AutoFact: GTP-binding protein YPTC5 n=4 Tax=Chlamydomonadales RepID=YPTC5_CHLRE 5.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab7 7.057e-13
N-terminus
sp_v3.0_unigene153205 SustainPine v3.0 199
AutoFact: Ras-related protein Rab-14 n=2 Tax=Dictyostelium RepID=RAB14_DICDI 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Small GTP-binding protein 6.084e-09
N-terminus
sp_v3.0_unigene153452 SustainPine v3.0 486
AutoFact: Rab small monomeric GTPase n=1 Tax=Grosmannia clavigera kw1407 RepID=F0X981_GROCL 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab7 9.151e-24
C-terminus
sp_v3.0_unigene153672 SustainPine v3.0 457
AutoFact: Rab11A, RAB family GTPase n=1 Tax=Dictyostelium purpureum RepID=F0ZAM9_DICPU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 3.159e-17
N-terminus
sp_v3.0_unigene153905 SustainPine v3.0 417
AutoFact: Rab GTPase [Dictyostelium discoideum AX4] sp|P36410.2|RAB14_DICDI RecName: Full=Ras-related protein Rab-14; AltName: Full=Rab4-like GTPase gb|EAL66754.1| Rab GTPase [Dictyostelium discoideum AX4] 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RAB2 homolog 9.747e-06
C-terminus
sp_v3.0_unigene154252 SustainPine v3.0 408
AutoFact: Rab-family small GTPase Rab1A n=1 Tax=Tetrahymena thermophila RepID=E1CAY1_TETTH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 1.905e-20
Putative N-terminus
sp_v3.0_unigene154309 SustainPine v3.0 397
AutoFact: Ras-related protein Rab-7A n=3 Tax=Dictyosteliida RepID=RAB7A_DICDI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab7 4.884e-16
N-terminus
sp_v3.0_unigene154385 SustainPine v3.0 316
AutoFact: Ran n=2 Tax=Branchiostoma RepID=Q1A7N9_BRABE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related nuclear protein 3 7.092e-08
Internal
sp_v3.0_unigene154460 SustainPine v3.0 188
AutoFact: GTP-binding protein YPTC5 n=4 Tax=Chlamydomonadales RepID=YPTC5_CHLRE 9.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab7 1.586e-19
Internal
sp_v3.0_unigene154509 SustainPine v3.0 429
AutoFact: Small GTPase, putative n=3 Tax=Trypanosoma brucei RepID=Q38DS4_9TRYP 5.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab7 2.73e-10
Internal
sp_v3.0_unigene154674 SustainPine v3.0 410
AutoFact: Small GTP-binding protein Rab4 n=1 Tax=Capsaspora owczarzaki ATCC 30864 RepID=E9C4Y4_9EUKA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab11/RabA-family small GTPase 2.048e-11
Internal
sp_v3.0_unigene154678 SustainPine v3.0 483
AutoFact: Rab-family small GTPase Rab1C n=1 Tax=Tetrahymena thermophila RepID=E1CAY3_TETTH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 4.266e-18
Putative N-terminus
sp_v3.0_unigene154703 SustainPine v3.0 494
AutoFact: Ras-like protein 1 n=1 Tax=Physarum polycephalum RepID=RAS1_PHYPO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene154728 SustainPine v3.0 357
AutoFact: PREDICTED: similar to RAB22A, member RAS oncogene family [Strongylocentrotus purpuratus] ref|XP_001176279.1| PREDICTED: similar to RAB22A, member RAS oncogene family [Strongylocentrotus purpuratus] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab11A 4.977e-15
N-terminus
sp_v3.0_unigene154758 SustainPine v3.0 421
AutoFact: PREDICTED: RAB1B, member RAS oncogene family-like n=1 Tax=Rattus norvegicus RepID=UPI0001CF4217 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rab18/RabC-family small GTPase 2.97e-15
N-terminus
sp_v3.0_unigene154866 SustainPine v3.0 385
AutoFact: PREDICTED: RAB1B, member RAS oncogene family-like n=1 Tax=Rattus norvegicus RepID=UPI0001CF4217 8.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein 2.592e-20
N-terminus
sp_v3.0_unigene155021 SustainPine v3.0 319
AutoFact: Novel protein similar to H.sapiens RAB7A, RAB7A, member RAS oncogene family(RAB7A, zgc:91909) n=1 Tax=Danio rerio RepID=Q6GQM5_DANRE 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ras-related protein Rab7 9.733e-13
N-terminus
sp_v3.0_unigene155129 SustainPine v3.0 264
AutoFact: Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYF6_HALO1 1.0e-20
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain