Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene77112 SustainPine v3.0 341
• AutoFact: GTP-binding nuclear protein n=2 Tax=Agaricales RepID=D8PSN6_SCHCM 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 6.433e-08
Internal
sp_v3.0_unigene78872 SustainPine v3.0 274
• AutoFact: Rab-type small GTP-binding protein (Fragment) n=2 Tax=fabids RepID=Q9SXT6_CICAR 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 7.349e-18
Misassembled
sp_v3.0_unigene98922 SustainPine v3.0 476
• AutoFact: Protein phosphatase 2C-like [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein phosphatase 2c, putative 5.662e-25
C-terminus
sp_v3.0_unigene102884 SustainPine v3.0 877
• AutoFact: PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5 1.0e-36
• FL-Next: sp=Midasin; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene105739 SustainPine v3.0 216
• AutoFact: MDN1, midasin homolog (ISS) [Ostreococcus tauri] emb|CAL50315.1| MDN1, midasin homolog (ISS) [Ostreococcus tauri] 1.0e-14
• FL-Next: tr=Midasin; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene107351 SustainPine v3.0 614
• AutoFact: MDN1, midasin homolog (ISS) [Ostreococcus tauri] emb|CAL50315.1| MDN1, midasin homolog (ISS) [Ostreococcus tauri] 5.0e-17
• FL-Next: sp=Midasin; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene113271 SustainPine v3.0 620
• AutoFact: Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8RPN0_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 7.024e-22
N-terminus
sp_v3.0_unigene122407 SustainPine v3.0 1095
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene127258 SustainPine v3.0 582
• AutoFact: Ras-related protein ric1 (Fragment) n=2 Tax=Oryza sativa Indica Group RepID=A6N1N5_ORYSI 7.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 4.215e-11
C-terminus
sp_v3.0_unigene127356 SustainPine v3.0 558
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative GTP-binding protein 4.579e-08
C-terminus
sp_v3.0_unigene127471 SustainPine v3.0 1067
• AutoFact: PREDICTED: similar to Ras-related protein ORAB-1 n=1 Tax=Ciona intestinalis RepID=UPI0000523C85 1.0e-30
• FL-Next: tr=Rab1; Pinus pinaster (Maritime pine). 0.0
• Sma3: GTP-binding protein 7.73e-13
C-terminus
sp_v3.0_unigene127629 SustainPine v3.0 957
• AutoFact: Probable protein phosphatase 2C 52 n=2 Tax=Oryza sativa RepID=P2C52_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein phosphatase 2C 5.519e-35
C-terminus
sp_v3.0_unigene127713 SustainPine v3.0 679
• AutoFact: Ras-related protein Rab7 n=11 Tax=core eudicotyledons RepID=RAB7_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab7 3.247e-16
N-terminus
sp_v3.0_unigene127773 SustainPine v3.0 332
• AutoFact: putative small Ras GTP-binding protein [Arabidopsis thaliana] 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 4.19e-08
C-terminus
sp_v3.0_unigene128791 SustainPine v3.0 492
• AutoFact: Catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase n=3 Tax=Andropogoneae RepID=B6TEB8_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase 4.429e-11
Internal
sp_v3.0_unigene129631 SustainPine v3.0 280
• AutoFact: Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8R4N2_SELML 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene132552 SustainPine v3.0 348
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 8.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11C 1.272e-12
Putative N-terminus
sp_v3.0_unigene133855 SustainPine v3.0 406
• AutoFact: Protein phosphtase 2C n=1 Tax=Marchantia polymorpha RepID=D3W6X9_MARPO 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein phosphatase 2C 2.8026e-45
Internal
sp_v3.0_unigene137685 SustainPine v3.0 382
• AutoFact: Ras-related protein Rab-18 n=4 Tax=Poaceae RepID=B6TCF9_MAIZE 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene141342 SustainPine v3.0 360
• AutoFact: small GTP-binding protein [Glycine max] 8.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 1.809e-15
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain