Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: RNA polymerase sigma factor 54, interaction

Term: IPR002078  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene58482 SustainPine v3.0 203
• AutoFact: Ras-related protein RABA2a [Arabidopsis thaliana] sp|O04486.1|RAA2A_ARATH RecName: Full=Ras-related protein RABA2a; Short=AtRABA2a; AltName: Full=Ras-related protein Rab11C; Short=AtRab11C; Flags: Precursor gb|AAB60720.1| Strong similarity to A. thaliana 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11C 1.43e-12
Putative N-terminus
sp_v3.0_unigene60647 SustainPine v3.0 366
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative GTP-binding protein 1.642e-10
N-terminus
sp_v3.0_unigene61380 SustainPine v3.0 318
• AutoFact: Rab11/RabA-family small GTPase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9T2W4_PHYPA 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab11/RabA-family small GTPase 1.244e-13
N-terminus
sp_v3.0_unigene61983 SustainPine v3.0 262
• AutoFact: Ras-related gtp-binding protein n=2 Tax=Micromonas RepID=C1E029_MICSR 2.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 1.143e-12
Internal
sp_v3.0_unigene63325 SustainPine v3.0 187
• AutoFact: PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5 7.0e-18
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene65269 SustainPine v3.0 262
• AutoFact: Ras-related protein RIC1 n=7 Tax=commelinids RepID=RIC1_ORYSJ 7.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 3.243e-13
Internal
sp_v3.0_unigene65459 SustainPine v3.0 216
• AutoFact: Rab5/RabF-family small GTPase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9STK1_PHYPA 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein RHN1 7.655e-14
Internal
sp_v3.0_unigene65670 SustainPine v3.0 172
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 5.445e-06
Putative C-terminus
sp_v3.0_unigene65682 SustainPine v3.0 300
• AutoFact: Rab1/RabD-family small GTPase n=7 Tax=Embryophyta RepID=A9SLS3_PHYPA 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 6.666e-13
Internal
sp_v3.0_unigene65872 SustainPine v3.0 173
• AutoFact: ras-related GTP binding protein possessing GTPase activity [Oryza sativa] 6.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 2.121e-08
Internal
sp_v3.0_unigene67484 SustainPine v3.0 148
• AutoFact: PREDICTED: similar to midasin-related n=1 Tax=Vitis vinifera RepID=UPI00019863A5 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene68021 SustainPine v3.0 245
• AutoFact: Ras-related gtp-binding protein n=2 Tax=Micromonas RepID=C1E029_MICSR 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Small GTP-binding protein 1.623e-08
Internal
sp_v3.0_unigene68643 SustainPine v3.0 183
• AutoFact: Rab family protein 4.0e-09
• FL-Next: sp=Uncharacterized GTP-binding protein At5g64813; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: GTP-binding protein, putative, expressed 1.901e-08
Internal
sp_v3.0_unigene73532 SustainPine v3.0 408
• AutoFact: GTPase n=2 Tax=Paxillus involutus RepID=Q5V8K1_PAXIN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 3.998e-17
Internal
sp_v3.0_unigene74665 SustainPine v3.0 133
• AutoFact: GTP-binding protein rab2 n=2 Tax=Metarhizium RepID=E9EPE4_METAR 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab2-like protein 4.798e-08
N-terminus
sp_v3.0_unigene74722 SustainPine v3.0 293
• AutoFact: GTP-binding protein n=1 Tax=Chlorella variabilis RepID=E1ZJ35_9CHLO 1.99965e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 5.807e-08
Internal
sp_v3.0_unigene75536 SustainPine v3.0 176
• AutoFact: GTP-binding nuclear protein Ran-3 n=3 Tax=Oryza sativa RepID=RAN3_ORYSJ 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related nuclear protein 3 4.947e-08
Internal
sp_v3.0_unigene75774 SustainPine v3.0 465
• AutoFact: GTP-binding protein ypt1 n=1 Tax=Aspergillus niger CBS 513.88 RepID=UPI0001F27511 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 2.687e-08
C-terminus
sp_v3.0_unigene75834 SustainPine v3.0 471
• AutoFact: Rab family GTPase n=3 Tax=Selaginella moellendorffii RepID=D8RE14_SELML 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ras-related protein Rab11A 5.3e-15
N-terminus
sp_v3.0_unigene76915 SustainPine v3.0 256
• AutoFact: Ras-related small GTPase Rab5 n=1 Tax=Gymnochlora stellata RepID=B5A4M2_GYMST 8.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rab5/RabF-family small GTPase 6.934e-11
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain