Sustainpine_db
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Name: Histone deacetylase superfamily

Term: IPR000286  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene122 SustainPine v3.0 1216
AutoFact: histone deacetylase, putative [Arabidopsis thaliana] 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene190 SustainPine v3.0 1747
AutoFact: histone deacetylase 15 [Arabidopsis thaliana] gb|AEE76110.1| histone deacetylase 15 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone deacetylase 4.049e-14
C-terminus
sp_v3.0_unigene663 SustainPine v3.0 2576
AutoFact: Histone deacetylase hda1, putative n=1 Tax=Ricinus communis RepID=B9RE34_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1120 SustainPine v3.0 2100
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Malpighiales RepID=B9IEX4_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone deacetylase 0.0
Complete
sp_v3.0_unigene1601 SustainPine v3.0 1451
AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Class III RPD3 type histone deacetylase protein 9.277e-10
Complete
sp_v3.0_unigene1659 SustainPine v3.0 1661
AutoFact: histone deacetylase 14 [Arabidopsis thaliana] sp|Q941D6.1|HDA14_ARATH RecName: Full=Histone deacetylase 14 gb|AAK97704.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AAM47377.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AEE86231.1| histone deacetyla 0.0
FL-Next: sp=Histone deacetylase 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 2.116e-22
Complete
sp_v3.0_unigene2381 SustainPine v3.0 1954
AutoFact: Histone deacetylase (Fragment) n=7 Tax=rosids RepID=D7SM47_VITVI 0.0
FL-Next: sp=Histone deacetylase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 0.0
Complete
sp_v3.0_unigene2515 SustainPine v3.0 3827
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative C-terminus
sp_v3.0_unigene3506 SustainPine v3.0 2695
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene5598 SustainPine v3.0 1449
AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
FL-Next: sp=Histone deacetylase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Class III RPD3 type histone deacetylase protein 9.277e-10
Complete
sp_v3.0_unigene7164 SustainPine v3.0 2086
AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone deacetylase 0.0
Complete
sp_v3.0_unigene8032 SustainPine v3.0 1673
AutoFact: Histone deacetylase complex, catalytic component HDA1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SZN1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone deacetylase 2.702e-06
Complete
sp_v3.0_unigene8226 SustainPine v3.0 4179
AutoFact: phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] ref|NP_850960.1| phosphatidylinositol 4-kinase alpha [Arabidopsis thaliana] sp|Q9SXA1.2|P4KA1_ARATH RecName: Full=Phosphatidylinositol 4-kinase alpha; Short=PI4-kinase alpha; Short=PtdIns-4-kinase 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phosphatidylinositol 4-kinase 1.15e-17
Complete
sp_v3.0_unigene13588 SustainPine v3.0 2778
AutoFact: probable histone deacetylase 19 [Zea mays] gb|AAP92528.1|AF322918_1 HDA1 [Zea mays] 0.0
FL-Next: tr=Os07g0602200 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Histone deacetylase 2.484e-14
Complete
sp_v3.0_unigene14220 SustainPine v3.0 903
AutoFact: nucleoporin 155 [Arabidopsis thaliana] gb|AEE29235.1| nucleoporin 155 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene30402 SustainPine v3.0 964
AutoFact: PREDICTED: histone deacetylase 6-like isoform 8 [Macaca mulatta] 6.0e-22
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative Complete
sp_v3.0_unigene43304 SustainPine v3.0 236
AutoFact: Histone deacetylase 6 n=5 Tax=Andropogoneae RepID=B6SH90_MAIZE 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene49394 SustainPine v3.0 350
AutoFact: nucleoporin 155 [Arabidopsis thaliana] gb|AEE29235.1| nucleoporin 155 [Arabidopsis thaliana] 3.0e-36
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene55690 SustainPine v3.0 476
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SSL4_RICCO 0.0
FL-Next: sp=U-box domain-containing protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene60787 SustainPine v3.0 237
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 2.0e-15
FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone deacetylase 5.985e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain