Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pectin lyase fold

Term: IPR012334  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene53634 SustainPine v3.0 445
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI 3.0e-14
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene53888 SustainPine v3.0 127
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NW72_PICSI 6.0e-14
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene53935 SustainPine v3.0 94
AutoFact: Putative polygalacturonase n=2 Tax=Oryza sativa RepID=Q5VS63_ORYSJ 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycoside hydrolase, family 28 6.102e-11
Internal
sp_v3.0_unigene54869 SustainPine v3.0 368
AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9SZT7_RICCO 1.00053e-42
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene55162 SustainPine v3.0 456
AutoFact: Pentatricopeptide repeat domain containing protein, putative [Solanum demissum] 7.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.117e-06
Internal
sp_v3.0_unigene55540 SustainPine v3.0 318
AutoFact: pfam00665, rve, Integrase core domain 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.377e-08
Internal
sp_v3.0_unigene55976 SustainPine v3.0 261
AutoFact: Pectinesterase n=1 Tax=Eutrema halophilum RepID=E4MXA5_THEHA 1.0e-29
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene56824 SustainPine v3.0 243
AutoFact: Unassigned protein 3.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene56860 SustainPine v3.0 318
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial; Flags: Precursor dbj|BAB01925.1| selenium-binding protein-like [Arabido 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene56861 SustainPine v3.0 400
AutoFact: Pectinesterase n=1 Tax=Vitis riparia RepID=Q9SW71_VITRI 4.0e-29
FL-Next: sp=Pectinesterase; Vitis riparia (Frost grape) (Vitis vulpina). 0.0
Internal
sp_v3.0_unigene57173 SustainPine v3.0 425
AutoFact: putative pectate lyase 18 [Arabidopsis thaliana] ref|NP_001190827.1| putative pectate lyase 18 [Arabidopsis thaliana] sp|Q9C5M8.2|PEL18_ARATH RecName: Full=Probable pectate lyase 18; AltName: Full=Pectate lyase A10; Flags: Precursor gb|AAW38990.1| At4g247 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectate lyase 0.0
Putative C-terminus
sp_v3.0_unigene57502 SustainPine v3.0 412
AutoFact: Pectinesterase (Fragment) n=3 Tax=Vitis vinifera RepID=D7U735_VITVI 1.99993e-41
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectinesterase 1.752e-14
Internal
sp_v3.0_unigene57907 SustainPine v3.0 298
AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI 3.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene57972 SustainPine v3.0 525
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 6.177e-29
Internal
sp_v3.0_unigene58631 SustainPine v3.0 195
AutoFact: Pectinesterase n=2 Tax=Oryza sativa RepID=Q53WM8_ORYSJ 1.0e-08
FL-Next: sp=Probable pectinesterase 53; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene58952 SustainPine v3.0 192
AutoFact: pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor 1.0e-07
FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene59335 SustainPine v3.0 322
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g09950 dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana] gb|AED91470.1| pen 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene59367 SustainPine v3.0 293
AutoFact: rve domain containing protein 8.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transposon protein, putative, unclassified 1.359e-08
Internal
sp_v3.0_unigene59932 SustainPine v3.0 391
AutoFact: pfam00665, rve, Integrase core domain 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 0.0
Internal
sp_v3.0_unigene60100 SustainPine v3.0 288
AutoFact: Pectate lyase, putative n=1 Tax=Ricinus communis RepID=B9RWM7_RICCO 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pectate lyase 2.11596e-43
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain