Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Pectin lyase fold

Term: IPR012334  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene165394 SustainPine v3.0 380
• AutoFact: 40S ribosomal protein S11 n=1 Tax=Postia placenta Mad-698-R RepID=B8P8P5_POSPM 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 9.47e-32
C-terminus
sp_v3.0_unigene165729 SustainPine v3.0 420
• AutoFact: Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QP36_ORYSJ 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.107e-36
Internal
sp_v3.0_unigene167030 SustainPine v3.0 340
• AutoFact: Pectinesterase n=1 Tax=Vitis riparia RepID=Q9SW71_VITRI 0.0
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene167204 SustainPine v3.0 363
• AutoFact: Sugi basic protein n=2 Tax=Cryptomeria japonica RepID=SBP_CRYJA 6.0e-33
• FL-Next: sp=Sugi basic protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). 0.0
• Sma3: Pectate lyase 0.0
Internal
sp_v3.0_unigene167333 SustainPine v3.0 223
• AutoFact: SNARE associated Golgi protein family [Arabidopsis thaliana] gb|AAR92258.1| At1g03260 [Arabidopsis thaliana] gb|AAS47670.1| At1g03260 [Arabidopsis thaliana] gb|AEE27551.1| SNARE associated Golgi protein family [Arabidopsis thaliana] 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene167892 SustainPine v3.0 144
• AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene168171 SustainPine v3.0 279
• AutoFact: Contains similarity to a polygalacturonase-like protein gi|7529266 from Arabidopsis thaliana BAC F18P9 gb|AL138654 and contains multiple polygalacturonase (pectinase) PF|00295 domains 8.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polygalacturonase 2.66e-19
Internal
sp_v3.0_unigene184901 SustainPine v3.0 764
• AutoFact: pectate lyase 2 [Musa acuminata AAA Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectate lyase 0.0
C-terminus
sp_v3.0_unigene185042 SustainPine v3.0 651
• AutoFact: ribosome-associated GTPase [Cyanothece sp. CCY0110] gb|EAZ93119.1| ribosome-associated GTPase [Cyanothece sp. CCY0110] 4.0e-15
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene185122 SustainPine v3.0 481
• AutoFact: Pectin lyase-like protein [Arabidopsis thaliana] gb|AAB71972.1| putative polygalacturonase [Arabidopsis thaliana] gb|AEE33700.1| Pectin lyase-like protein [Arabidopsis thaliana] 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene187314 SustainPine v3.0 657
• AutoFact: Pectase lyase n=2 Tax=Prunus persica RepID=D4NXR8_PRUPE 5.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectate lyase 2.287e-40
N-terminus
sp_v3.0_unigene188337 SustainPine v3.0 324
• AutoFact: polygalacturonase [Eucalyptus globulus subsp. globulus] 9.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene188597 SustainPine v3.0 459
• AutoFact: pectate lyase [Musa acuminata AAA Group] 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectate lyase 2.304e-36
C-terminus
sp_v3.0_unigene189250 SustainPine v3.0 803
• AutoFact: pectate lyase precursor [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectate lyase 0.0
C-terminus
sp_v3.0_unigene189715 SustainPine v3.0 558
• AutoFact: Pectinesterase (Fragment) n=3 Tax=Vitis vinifera RepID=D7TIW5_VITVI 1.0e-35
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene191021 SustainPine v3.0 379
• AutoFact: 40S ribosomal protein S11 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NHB6_PHYIT 2.00386e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.211e-35
C-terminus
sp_v3.0_unigene191475 SustainPine v3.0 421
• AutoFact: Ribosomal protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4D6_MICSR 2.99878e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 1.286e-35
C-terminus
sp_v3.0_unigene194107 SustainPine v3.0 354
• AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NUI7_PICSI 0.0
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
Internal
sp_v3.0_unigene194398 SustainPine v3.0 535
• AutoFact: pectate lyase [Fragaria x ananassa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectate lyase 0.0
Internal
sp_v3.0_unigene195167 SustainPine v3.0 516
• AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9SP63_RICCO 3.0e-33
• FL-Next: sp=Pectinesterase; Taiwania cryptomerioides. 0.0
• Sma3: Pectinesterase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain