Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ubiquitin-dependent protein catabolic process

Term: GO:0006511  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2310 SustainPine v3.0 779
AutoFact: ubiquitin-protein ligase 1 [Arabidopsis thaliana] 0.0
FL-Next: sp=E3 ubiquitin-protein ligase UPL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: E3 ubiquitin protein ligase upl2, putative 5.237e-09
Internal
sp_v3.0_unigene2592 SustainPine v3.0 3472
AutoFact: PREDICTED: similar to KAK (KAKTUS) isoform 1 n=2 Tax=Vitis vinifera RepID=UPI0001982DD6 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative HECT ubiquitin-protein ligase 3 1.023e-08
Complete
sp_v3.0_unigene2615 SustainPine v3.0 2903
AutoFact: cullin-like protein1 [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cullin-1, putative 2.754e-08
Complete
sp_v3.0_unigene2716 SustainPine v3.0 4576
AutoFact: Cysteine-type endopeptidase, putative n=1 Tax=Ricinus communis RepID=B9RNQ1_RICCO 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 5.258e-13
Complete
sp_v3.0_unigene2822 SustainPine v3.0 1309
AutoFact: Sina domain containing protein 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene3023 SustainPine v3.0 1620
AutoFact: Proteasome subunit beta type-3 n=2 Tax=Picea RepID=PSB3_PICMA 0.0
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3050 SustainPine v3.0 2951
AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Vitis vinifera RepID=A5AXN2_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene3112 SustainPine v3.0 4515
AutoFact: E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] ref|NP_001189915.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gb|AAM13201.1| unkn 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3121 SustainPine v3.0 3756
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TR00_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 25; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene3305 SustainPine v3.0 4215
AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 1.959e-11
Complete
sp_v3.0_unigene3374 SustainPine v3.0 2281
AutoFact: protein embryo defective 1703 [Arabidopsis thaliana] emb|CAB71108.1| putative protein [Arabidopsis thaliana] gb|AEE80256.1| protein embryo defective 1703 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene3376 SustainPine v3.0 472
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene3397 SustainPine v3.0 797
AutoFact: Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] dbj|BAD42412.1| plant-specific family protein RPD1 [Arabidopsis thaliana] gb|AEE86235.1| Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene3612 SustainPine v3.0 2717
AutoFact: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ricinus communis RepID=B9SNV7_RICCO 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 23; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Ubiquitin carboxyl-terminal hydrolase 6.924e-18
Putative Complete
sp_v3.0_unigene3623 SustainPine v3.0 1354
AutoFact: seven in absentia-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene3693 SustainPine v3.0 4122
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SU81_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 26; Oryza sativa subsp. indica (Rice). 0.0
Sma3: Ubiquitin-specific-processing protease 26 9.505e-09
Complete
sp_v3.0_unigene3936 SustainPine v3.0 1413
AutoFact: Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NK23_PICSI 0.0
FL-Next: sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4052 SustainPine v3.0 1290
AutoFact: Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NMG7_PICSI 0.0
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4132 SustainPine v3.0 1611
AutoFact: Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NKT0_PICSI 0.0
FL-Next: sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4210 SustainPine v3.0 2697
AutoFact: TIR1/AFB auxin receptor protein PintaTIR1 n=1 Tax=Pinus taeda RepID=C9EHS7_PINTA 0.0
FL-Next: tr=TIR1/AFB auxin receptor protein PintaTIR1; Pinus taeda (Loblolly pine). 0.0
Sma3: TIR1-like protein 9.664e-20
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain