Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid binding, OB-fold, tRNA/helicase-type

Term: IPR004365  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene15721 SustainPine v3.0 1262
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene17618 SustainPine v3.0 1328
• AutoFact: replication protein A 30kDa [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative replication factor A 1.122e-08
Complete
sp_v3.0_unigene18404 SustainPine v3.0 1189
• AutoFact: [J] COG0017 Aspartyl/asparaginyl-tRNA synthetases 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Aspartyl-tRNA synthetase 6.135e-08
N-terminus
sp_v3.0_unigene19342 SustainPine v3.0 3014
• AutoFact: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9S1L9_RICCO 0.0
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Replication protein A1-like protein 4.155e-08
Complete
sp_v3.0_unigene23100 SustainPine v3.0 3123
• AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gb|AEE85872.1| asp 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene24056 SustainPine v3.0 1255
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene27131 SustainPine v3.0 2097
• AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Aspartyl-tRNA synthetase, putative 2.487e-09
Complete
sp_v3.0_unigene27971 SustainPine v3.0 2344
• AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] emb|CAB87691.1| putative protein [Arabidopsis thaliana] gb|AAM13183.1| putative protein [Arabidopsis thaliana] gb|AAP68292.1| At5g11730 [Arabidopsis thaliana 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g19160 4.041e-08
Complete
sp_v3.0_unigene36571 SustainPine v3.0 599
• AutoFact: pfam01336, tRNA_anti, OB-fold nucleic acid binding domain 0.0001
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene52850 SustainPine v3.0 342
• AutoFact: Aspartyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9S7X4_RICCO 1.0e-31
• FL-Next: tr=Aspartyl-tRNA synthetase, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Putative aspartate--tRNA ligase 5.743e-09
Internal
sp_v3.0_unigene53610 SustainPine v3.0 399
• AutoFact: Phospholipase D n=3 Tax=Solanaceae RepID=Q9AWB7_SOLLC 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene56940 SustainPine v3.0 366
• AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gb|AEE85872.1| asp 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative aspartate-tRNA ligase 7.829e-08
C-terminus
sp_v3.0_unigene57704 SustainPine v3.0 376
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene61610 SustainPine v3.0 333
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OB-fold nucleic acid binding domain containing protein 2.122e-08
N-terminus
sp_v3.0_unigene64312 SustainPine v3.0 225
• AutoFact: DNA polymerase epsilon subunit B -like protein [Arabidopsis thaliana] 7.0e-13
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: DNA polymerase epsilon subunit B-like protein 2.522e-09
Internal
sp_v3.0_unigene65453 SustainPine v3.0 237
• AutoFact: Dihydrolipoyl dehydrogenase n=2 Tax=Picea sitchensis RepID=B8LLJ4_PICSI 4.0e-29
• FL-Next: sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dihydrolipoyl dehydrogenase 0.0
Internal
sp_v3.0_unigene66056 SustainPine v3.0 300
• AutoFact: RPA 32kDa [Pisum sativum] 2.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene67376 SustainPine v3.0 418
• AutoFact: Aspartyl-tRNA synthetase n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=D5UNK7_TSUPD 0.0
• FL-Next: sp=Lysine--tRNA ligase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative aspartate--tRNA ligase 1.385e-08
Internal
sp_v3.0_unigene67756 SustainPine v3.0 272
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene68778 SustainPine v3.0 227
• AutoFact: CST complex subunit STN1 [Arabidopsis thaliana] sp|Q9LMK5.1|STN1_ARATH RecName: Full=CST complex subunit STN1; AltName: Full=Suppressor of cdc thirteen homolog; Short=AtSTN1 gb|AAF82208.1|AC067971_16 F10K1.17 [Arabidopsis thaliana] gb|AAM63429.1| unknown 7.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain