Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA processing

Term: GO:0006364  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene118891 SustainPine v3.0 119
AutoFact: nucleolus protein [Cryptococcus neoformans var. neoformans JEC21] ref|XP_777117.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var. neoformans B-3501A] gb|EAL22470.1| hypothetical protein CNBB3490 [Cryptococcus neoformans var. neoformans B-3501 7.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene121666 SustainPine v3.0 421
AutoFact: Ribonuclease II, putative n=1 Tax=Ricinus communis RepID=B9T6X7_RICCO 2.0e-33
FL-Next: tr=Ribonuclease II, putative; Ricinus communis (Castor bean). 0.0
Sma3: Ribonuclease II-like protein 1.111e-09
Internal
sp_v3.0_unigene127176 SustainPine v3.0 570
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 20 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 30 6.609e-08
Putative C-terminus
sp_v3.0_unigene127235 SustainPine v3.0 820
AutoFact: Probable U3 small nucleolar RNA-associated protein 11 n=2 Tax=Arabidopsis RepID=UTP11_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U3 snoRNA-associated protein 11 1.616e-09
Complete
sp_v3.0_unigene127238 SustainPine v3.0 1183
AutoFact: putative cinnamoyl-CoA reductase [Oryza sativa Japonica Group] 1.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cinnamoyl-CoA reductase, putative 6.524e-07
N-terminus
sp_v3.0_unigene127273 SustainPine v3.0 655
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 20 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 1.829e-08
C-terminus
sp_v3.0_unigene128228 SustainPine v3.0 608
AutoFact: Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb|AAC63661.2| putative cinnamoyl CoA reductase [Arabidopsis thaliana] gb|ABK32183.1| At2g23910 [Arabidopsis thaliana] gb|AEC07501.1| Rossmann-fold NAD(P)-binding domain-contain 6.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene130370 SustainPine v3.0 449
AutoFact: Proliferating-cell nucleolar antigen p120, putative n=1 Tax=Ricinus communis RepID=B9S9W8_RICCO 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Misassembled
sp_v3.0_unigene130501 SustainPine v3.0 426
AutoFact: radical SAM domain-containing protein [Arabidopsis thaliana] gb|AAO41968.1| unknown protein [Arabidopsis thaliana] gb|AAO50541.1| unknown protein [Arabidopsis thaliana] gb|AEE76269.1| radical SAM domain-containing protein [Arabidopsis thaliana] 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene131471 SustainPine v3.0 390
AutoFact: Ribonuclease II/R family protein [Arabidopsis thaliana] gb|AAQ62877.1| At5g02250 [Arabidopsis thaliana] dbj|BAD44146.1| ribonuclease II-like protein [Arabidopsis thaliana] gb|AED90450.1| Ribonuclease II/R family protein [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Ribonuclease II-like protein 1.475e-09
Internal
sp_v3.0_unigene131931 SustainPine v3.0 449
AutoFact: ethylene-responsive RNA helicase [Solanum lycopersicum] 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 20 4.622e-09
Internal
sp_v3.0_unigene132263 SustainPine v3.0 247
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene132877 SustainPine v3.0 451
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 14 dbj|BAD68264.1| putative p68 RNA helicase [Oryza sativa Japonica Group] gb|EEE53957.1| hypothetical protein OsJ_00557 [Oryza sativa Japonica Group] gb|ACS44654.1| ATP-dependent RNA helicase DB10 [Oryza 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 3.057e-10
Internal
sp_v3.0_unigene134561 SustainPine v3.0 173
AutoFact: Oligopeptide transporter OPT family n=2 Tax=Populus trichocarpa RepID=B9IH03_POPTR 1.0e-14
FL-Next: sp=Oligopeptide transporter 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Oligopeptide transporter OPT family 3.827e-16
Internal
sp_v3.0_unigene135681 SustainPine v3.0 433
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAJ6_RICCO 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 1.633e-09
Putative C-terminus
sp_v3.0_unigene139941 SustainPine v3.0 417
AutoFact: putative cinnamoyl-CoA reductase [Oryza sativa Japonica Group] 1.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cinnamoyl-CoA reductase, putative 1.506e-06
Internal
sp_v3.0_unigene142008 SustainPine v3.0 359
AutoFact: Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fibrillarin, putative 6.336e-08
Putative N-terminus
sp_v3.0_unigene142174 SustainPine v3.0 230
AutoFact: Eukaryotic initiation factor 4A (ATP-dependent RNA helicase eIF4A) n=1 Tax=Chlorella variabilis RepID=E1ZM95_9CHLO 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Eukaryotic initiation factor 4A-like protein 5.506e-08
Putative N-terminus
sp_v3.0_unigene143072 SustainPine v3.0 201
AutoFact: Eukaryotic initiation factor 4A-3 n=2 Tax=Arabidopsis RepID=IF4A3_ARATH 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 3.817e-09
Internal
sp_v3.0_unigene143590 SustainPine v3.0 427
AutoFact: Probable U3 small nucleolar RNA-associated protein 11 n=2 Tax=Arabidopsis RepID=UTP11_ARATH 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain