Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: rRNA processing

Term: GO:0006364  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene86864 SustainPine v3.0 366
• AutoFact: TT_ORF1 multi-domain protein 2.0e-05
coding
sp_v3.0_unigene95613 SustainPine v3.0 656
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 8.17e-08
Putative N-terminus
sp_v3.0_unigene96691 SustainPine v3.0 1390
• AutoFact: putative U3 small nucleolar RNA-associated protein 11 [Arabidopsis thaliana] sp|Q9M223.1|UTP11_ARATH RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 emb|CAB81822.1| putative protein [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U3 snoRNA-associated protein 11 1.39e-09
Complete
sp_v3.0_unigene96843 SustainPine v3.0 551
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 2.0e-15
• FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Internal
sp_v3.0_unigene96909 SustainPine v3.0 230
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 2.0e-25
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene97443 SustainPine v3.0 520
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 45 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.955e-12
Internal
sp_v3.0_unigene98337 SustainPine v3.0 720
• AutoFact: dead-box helicase [Platanus x acerifolia] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.628e-21
Internal
sp_v3.0_unigene99035 SustainPine v3.0 1241
• AutoFact: Helicase, C-terminal [Medicago truncatula] 4.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.867e-08
C-terminus
sp_v3.0_unigene99666 SustainPine v3.0 944
• AutoFact: ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AEE32505.1| ribosomal RNA small subunit met 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene99708 SustainPine v3.0 1113
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAC01839.1| WD40-repeat protein [Arabidopsis thaliana] gb|AED92333.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene101009 SustainPine v3.0 365
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 7.0e-15
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene101421 SustainPine v3.0 1343
• AutoFact: Carbohydrate kinase, PfkB [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene103907 SustainPine v3.0 514
• AutoFact: ribonuclease II-like protein [Arabidopsis thaliana] 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene105331 SustainPine v3.0 294
• AutoFact: U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9S245_RICCO 5.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene106350 SustainPine v3.0 535
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized protein At3g06530; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene106885 SustainPine v3.0 366
• AutoFact: Oligopeptide transporter 7 n=2 Tax=Arabidopsis RepID=OPT7_ARATH 6.0e-30
• FL-Next: sp=Oligopeptide transporter 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Oligopeptide transporter OPT family 5.669e-28
Putative N-terminus
sp_v3.0_unigene107948 SustainPine v3.0 302
• AutoFact: pfam03169, OPT, OPT oligopeptide transporter protein 1.0e-18
• FL-Next: sp=Oligopeptide transporter 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Oligopeptide transporter OPT family 8.047e-28
Internal
sp_v3.0_unigene108541 SustainPine v3.0 712
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAB02349.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76521.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene110369 SustainPine v3.0 179
• AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 1.0e-13
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 6.229e-09
Internal
sp_v3.0_unigene118361 SustainPine v3.0 332
• AutoFact: RecName: Full=ATP-dependent RNA helicase DBP2 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 3.715e-08
Putative C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain