Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: rRNA processing

Term: GO:0006364  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene34279 SustainPine v3.0 699
• AutoFact: Nucleolar RNA-binding Nop10p-like protein n=1 Tax=Wolffia arrhiza RepID=D2XQX9_WOLAR 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 5.586e-09
Complete
sp_v3.0_unigene34778 SustainPine v3.0 578
• AutoFact: Nucleolar RNA-binding Nop10p-like protein n=1 Tax=Wolffia arrhiza RepID=D2XQX9_WOLAR 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 3-like protein 5.586e-09
Complete
sp_v3.0_unigene35662 SustainPine v3.0 1099
• AutoFact: putative U3 small nucleolar RNA-associated protein 11 [Arabidopsis thaliana] sp|Q9M223.1|UTP11_ARATH RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 emb|CAB81822.1| putative protein [Arabidopsis t 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U3 snoRNA-associated protein 11 1.39e-09
Complete
sp_v3.0_unigene35667 SustainPine v3.0 1033
• AutoFact: DEAD-box ATP-dependent RNA helicase 37 n=2 Tax=Oryza sativa Japonica Group RepID=RH37_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.076e-30
Internal
sp_v3.0_unigene36262 SustainPine v3.0 3239
• AutoFact: HSP20 multi-domain protein 4.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat-shock protein, putative 1.367e-30
Putative Complete
sp_v3.0_unigene37474 SustainPine v3.0 585
• AutoFact: Hydroxyacid dehydrogenase/reductase; 6-phosphogluconate dehydrogenase, C-terminal-like n=2 Tax=Medicago truncatula RepID=Q2HVD9_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 3-hydroxyisobutyrate dehydrogenase, putative 3.59e-07
Internal
sp_v3.0_unigene37846 SustainPine v3.0 690
• AutoFact: eukaryotic initiation factor 4A [Pennisetum glaucum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 3.985e-09
Internal
sp_v3.0_unigene38869 SustainPine v3.0 1569
• AutoFact: putative U3 small nucleolar RNA-associated protein 11 [Arabidopsis thaliana] sp|Q9M223.1|UTP11_ARATH RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 emb|CAB81822.1| putative protein [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U3 snoRNA-associated protein 11 1.501e-09
Complete
sp_v3.0_unigene39419 SustainPine v3.0 474
• AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 7.0e-08
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: H/ACA ribonucleoprotein complex subunit 1-like protein 1 1.411e-09
Putative C-terminus
sp_v3.0_unigene39643 SustainPine v3.0 678
• AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 7.087e-14
Putative N-terminus
sp_v3.0_unigene40353 SustainPine v3.0 524
• AutoFact: H/ACA ribonucleoprotein complex subunit 1-like protein 1 n=5 Tax=Andropogoneae RepID=B6TFJ5_MAIZE 0.0
• FL-Next: sp=Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chromosome chr8 scaffold_34, whole genome shotgun sequence 0.0
Putative C-terminus
sp_v3.0_unigene41177 SustainPine v3.0 161
• AutoFact: [R] COG2319 FOG: WD40 repeat 6.0e-07
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene42387 SustainPine v3.0 1432
• AutoFact: RimM-like 16S rRNA processing protein [Arabidopsis thaliana] dbj|BAB10810.1| unnamed protein product [Arabidopsis thaliana] gb|AED95383.1| RimM-like 16S rRNA processing protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable UDP-N-acetylglucosamine pyrophosphorylase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: cDNA clone:J013060F08, full insert sequence 5.848e-06
Putative N-terminus
sp_v3.0_unigene42805 SustainPine v3.0 318
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized protein At3g06530; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene43502 SustainPine v3.0 156
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL24132.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AAM20284.1| putative WD-repeat membrane protein [Arabidopsis thaliana] gb|AEE82445.1| transducin/WD40 domain-cont 5.0e-17
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene44163 SustainPine v3.0 871
• AutoFact: ribosomal RNA small subunit methyltransferase E [Arabidopsis thaliana] gb|AAT68325.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AAV63853.1| hypothetical protein At1g50000 [Arabidopsis thaliana] gb|AEE32505.1| ribosomal RNA small subunit met 5.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Os03g0729700 protein 4.386e-06
Putative C-terminus
sp_v3.0_unigene44582 SustainPine v3.0 826
• AutoFact: Ribonuclease II, putative n=1 Tax=Ricinus communis RepID=B9T6X7_RICCO 0.0
• FL-Next: tr=Ribonuclease II, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Ribonuclease II-like protein 1.111e-09
N-terminus
sp_v3.0_unigene46112 SustainPine v3.0 795
• AutoFact: DEAD-box ATP-dependent RNA helicase 35 [Arabidopsis thaliana] sp|Q9LU46.1|RH35_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 35 dbj|BAA97391.1| DEAD-box protein abstrakt [Arabidopsis thaliana] dbj|BAE98527.1| DEAD-box protein abstrakt [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 1.135e-19
C-terminus
sp_v3.0_unigene46299 SustainPine v3.0 570
• AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T842_RICCO 0.0
• FL-Next: tr=WD-repeat protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene47351 SustainPine v3.0 346
• AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 4.00001e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 24 1.008e-07
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain