Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: transcription regulator activity

Term: GO:0030528  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene185811 SustainPine v3.0 456
• AutoFact: pfam00010, HLH, Helix-loop-helix DNA-binding domain 3.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene186994 SustainPine v3.0 326
• AutoFact: DNA-directed RNA polymerase subunit n=3 Tax=Andropogoneae RepID=C5YC89_SORBI 6.0e-06
• FL-Next: sp=DNA-directed RNA polymerase subunit; Selaginella moellendorffii (Spikemoss). 0.0
Putative N-terminus
sp_v3.0_unigene188519 SustainPine v3.0 775
• AutoFact: DNA-directed RNA polymerase subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SFI8_PHYPA 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene191866 SustainPine v3.0 627
• AutoFact: Putative ribosomal protein L7e n=1 Tax=Maconellicoccus hirsutus RepID=A2I448_MACHI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7-2 9.259e-08
C-terminus
sp_v3.0_unigene191959 SustainPine v3.0 511
• AutoFact: 60S ribosomal protein L7 n=1 Tax=Phytophthora infestans T30-4 RepID=D0N7N5_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7 4.565e-11
Internal
sp_v3.0_unigene193427 SustainPine v3.0 446
• AutoFact: Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Tr 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7, putative 4.273e-11
C-terminus
sp_v3.0_unigene193429 SustainPine v3.0 478
• AutoFact: PREDICTED: 60S ribosomal protein L7 n=1 Tax=Apis mellifera RepID=UPI00003C0F40 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7, putative 9.59e-11
Putative C-terminus
sp_v3.0_unigene193592 SustainPine v3.0 615
• AutoFact: Ribosomal protein L7 isoform A n=2 Tax=Lysiphlebus testaceipes RepID=Q56FE6_LYSTE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7-2 1.154e-07
N-terminus
sp_v3.0_unigene193764 SustainPine v3.0 197
• AutoFact: formin binding protein-like [Arabidopsis thaliana] 2.0e-07
• FL-Next: sp=Pre-mRNA-processing protein 40B; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Protein binding protein, putative 4.24e-06
Internal
sp_v3.0_unigene194467 SustainPine v3.0 458
• AutoFact: putative basic-helix-loop-helix transcription factor [Oryza sativa Japonica Group] gb|EAZ24247.1| hypothetical protein OsJ_07997 [Oryza sativa Japonica Group] 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene194804 SustainPine v3.0 400
• AutoFact: DNA binding protein n=1 Tax=Zea mays RepID=B6STU1_MAIZE 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 8.01e-08
C-terminus
sp_v3.0_unigene195442 SustainPine v3.0 258
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RWI9_RICCO 6.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 4.054e-11
Internal
sp_v3.0_unigene196731 SustainPine v3.0 492
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene196737 SustainPine v3.0 373
• AutoFact: R2R3 transcription factor MYB108-like protein 1 n=3 Tax=Vitis vinifera RepID=C3W4Q3_VITVI 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 3.451e-33
N-terminus
sp_v3.0_unigene197044 SustainPine v3.0 507
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_33.assembly12x (Fragment) n=2 Tax=rosids RepID=D7U403_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Urea active transporter-like protein 3.168e-09
Putative Complete
sp_v3.0_unigene197115 SustainPine v3.0 321
• AutoFact: MYB transcription factor MYB92 [Glycine max] 1.00053e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.455e-11
Putative N-terminus
sp_v3.0_unigene197728 SustainPine v3.0 622
• AutoFact: aprataxin [Arabidopsis thaliana] sp|Q9M041.1|BH140_ARATH RecName: Full=Transcription factor bHLH140; AltName: Full=Basic helix-loop-helix protein 140; Short=AtbHLH140; Short=bHLH 140; AltName: Full=Transcription factor EN 122; AltName: Full=bHLH transcrip 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene198236 SustainPine v3.0 544
• AutoFact: transcription elongation factor TFIIS [Schizosaccharomyces pombe 972h-] sp|P49373.1|TFS2_SCHPO RecName: Full=Transcription elongation factor S-II; AltName: Full=TFIIS gb|AAA74048.1| transcription elongation factor TFIIS [Schizosaccharomyces pombe] emb|CAC 9.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene198442 SustainPine v3.0 455
• AutoFact: 60S ribosomal protein L7 n=4 Tax=Pleosporineae RepID=B2WF45_PYRTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L7 2.196e-11
C-terminus
sp_v3.0_unigene198706 SustainPine v3.0 218
• AutoFact: APO protein 3 [Arabidopsis thaliana] ref|NP_001119475.1| APO protein 3 [Arabidopsis thaliana] sp|Q9FH50.1|APO3_ARATH RecName: Full=APO protein 3, mitochondrial; Flags: Precursor dbj|BAB08879.1| unnamed protein product [Arabidopsis thaliana] gb|AED97538.1| 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain