Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase activity

Term: GO:0003899  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene85910 SustainPine v3.0 233
• AutoFact: DUF605 multi-domain protein 2.0e-06
• Sma3: DNA-directed RNA polymerase 1.97e-19
coding
sp_v3.0_unigene86121 SustainPine v3.0 334
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group RepID=Q0DKN9_ORYSJ 0.0001
coding
sp_v3.0_unigene93960 SustainPine v3.0 1377
• AutoFact: DUF659 multi-domain protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene94507 SustainPine v3.0 839
• AutoFact: RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri] emb|CAL58583.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri] 8.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene95622 SustainPine v3.0 592
• AutoFact: plastocyanin-like domain-containing protein [Arabidopsis thaliana] gb|AAB95306.1| putative phytocyanin [Arabidopsis thaliana] gb|AEC07879.1| plastocyanin-like domain-containing protein [Arabidopsis thaliana] 6.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative glycine-rich cell wall structural protein 1.958e-07
N-terminus
sp_v3.0_unigene96158 SustainPine v3.0 416
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Agathis australis (Kauri) (Dammara australis). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 5.497e-32
Internal
sp_v3.0_unigene97456 SustainPine v3.0 588
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ricinus communis RepID=B9RGA8_RICCO 5.0e-25
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene99374 SustainPine v3.0 440
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.16e-06
Internal
sp_v3.0_unigene100218 SustainPine v3.0 317
• AutoFact: DNA-directed RNA polymerase n=4 Tax=Solanaceae RepID=Q1L5Z1_SOLLC 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 2.155e-28
Internal
sp_v3.0_unigene100369 SustainPine v3.0 438
• AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 4.0e-12
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene101651 SustainPine v3.0 479
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 6.085e-25
C-terminus
sp_v3.0_unigene102833 SustainPine v3.0 722
• AutoFact: histone-lysine N-methyltransferase ATX1 [Arabidopsis thaliana] sp|Q9C5X4.2|ATX1_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX1; AltName: Full=Protein SET DOMAIN GROUP 27; AltName: Full=Trithorax-homolog protein 1; Short=TRX-homolog protein 1 0.0
• FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
• Sma3: SET domain protein 4.007e-13
Internal
sp_v3.0_unigene104736 SustainPine v3.0 542
• AutoFact: SIN-like protein [Arabidopsis thaliana] dbj|BAB10766.1| unnamed protein product [Arabidopsis thaliana] gb|AED95826.1| SIN-like protein [Arabidopsis thaliana] 2.0e-30
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene105032 SustainPine v3.0 422
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9GM06_POPTR 2.0e-29
• FL-Next: sp=DNA-directed RNA polymerase E subunit 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.94e-11
Internal
sp_v3.0_unigene106245 SustainPine v3.0 563
• AutoFact: RNA polymerase III subunit RPC82 family protein [Arabidopsis thaliana] gb|AAM20485.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana] gb|AAQ56824.1| At3g49000 [Arabidopsis thaliana] gb|AEE78481.1| RNA polymerase III subunit RPC82 family pro 1.0e-16
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene106985 SustainPine v3.0 420
• AutoFact: Sin_N domain containing protein 4.0e-16
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene107823 SustainPine v3.0 402
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
• Sma3: DNA-directed RNA polymerase 1.371e-20
Internal
sp_v3.0_unigene107890 SustainPine v3.0 355
• AutoFact: Lectin-like receptor kinase 7 n=2 Tax=Andropogoneae RepID=B6SWU9_MAIZE 3.9937e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative receptor-type protein kinase LRK1 1.484e-26
Internal
sp_v3.0_unigene108173 SustainPine v3.0 201
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 4.0e-14
• FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene108304 SustainPine v3.0 389
• AutoFact: DNA-directed RNA polymerase II, third largest subunit [Arabidopsis thaliana] 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase II, third largest subunit 3.392e-09
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain