Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase activity

Term: GO:0003899  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene56343 SustainPine v3.0 295
• AutoFact: DUF659 domain containing protein 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene56377 SustainPine v3.0 386
• AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 6.0e-38
• FL-Next: tr=Integrase core domain containing protein; Asparagus officinalis (Garden asparagus). 0.0
• Sma3: Gag-Pol polyprotein 3.525e-11
Internal
sp_v3.0_unigene56778 SustainPine v3.0 330
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Selaginella moellendorffii RepID=D8S1N7_SELML 5.0e-39
• FL-Next: sp=DNA-directed RNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: DNA-directed RNA polymerase 9.633e-11
Internal
sp_v3.0_unigene56927 SustainPine v3.0 249
• AutoFact: RNA polymerase, dimerisation [Medicago truncatula] 4.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene57245 SustainPine v3.0 129
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 2.0e-08
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 3.347e-27
Internal
sp_v3.0_unigene57508 SustainPine v3.0 322
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI 2.0e-26
• FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene58858 SustainPine v3.0 316
• AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 6.0e-35
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.134e-21
Internal
sp_v3.0_unigene59151 SustainPine v3.0 450
• AutoFact: Homeobox domain containing protein 5.0e-09
• FL-Next: tr=Class III homeodomain-leucine zipper protein C3HDZ1; Taxus globosa. 0.0
• Sma3: Class III homeodomain-leucine zipper protein C3HDZ1 2.864e-33
Internal
sp_v3.0_unigene59169 SustainPine v3.0 127
• AutoFact: DNA-directed RNA polymerase II, subunit n, putative n=2 Tax=Tracheophyta RepID=B9T3C0_RICCO 5.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene59824 SustainPine v3.0 97
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 1.0e-07
• FL-Next: Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b 0.0
Internal
sp_v3.0_unigene62073 SustainPine v3.0 165
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Pinus koraiensis RepID=A4QM13_PINKO 1.0e-05
• FL-Next: sp=DNA-directed RNA polymerase; Pinus koraiensis (Korean pine). Plastid; Chloroplast. 0.0
N-terminus
sp_v3.0_unigene62258 SustainPine v3.0 237
• AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8T979_SELML 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 8.566e-06
C-terminus
sp_v3.0_unigene62553 SustainPine v3.0 183
• AutoFact: PREDICTED: DNA-directed RNA polymerase III subunit RPC2 n=1 Tax=Acyrthosiphon pisum RepID=UPI00017918AB 3.0e-23
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 6.759e-31
Internal
sp_v3.0_unigene62960 SustainPine v3.0 228
• AutoFact: DNA-directed RNA polymerase D subunit 2a n=3 Tax=Arabidopsis RepID=RPD2A_ARATH 2.0e-13
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 4.708e-12
Internal
sp_v3.0_unigene63585 SustainPine v3.0 209
• AutoFact: DNA-directed RNA polymerase (Fragment) n=3 Tax=Gnetopsida RepID=Q2TUN5_EPHVI 2.0e-21
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.449e-23
Internal
sp_v3.0_unigene64084 SustainPine v3.0 118
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IL57_POPTR 7.0e-07
• FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene64827 SustainPine v3.0 156
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 6.0e-22
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 2.799e-28
Internal
sp_v3.0_unigene66252 SustainPine v3.0 370
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A5AMN9_VITVI 4.0e-25
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Pinus densiflora (Japanese red pine). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 2.997e-39
Internal
sp_v3.0_unigene68215 SustainPine v3.0 359
• AutoFact: RNA polymerase I subunit 43 [Arabidopsis thaliana] gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana] gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana] gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidops 2.0e-15
• FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
C-terminus
sp_v3.0_unigene68281 SustainPine v3.0 198
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 1.0e-20
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 5.553e-12
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain