Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene46973 SustainPine v3.0 204
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 3.0e-08
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene47898 SustainPine v3.0 835
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized protein At4g10930; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48260 SustainPine v3.0 571
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 1.0e-26
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene48395 SustainPine v3.0 553
AutoFact: Phd finger protein, putative n=1 Tax=Ricinus communis RepID=B9SP39_RICCO 3.0e-37
FL-Next: sp=Histone-lysine N-methyltransferase ATX2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SET domain protein 1.821e-06
Internal
sp_v3.0_unigene48411 SustainPine v3.0 186
AutoFact: histone-lysine N-methyltransferase ASHR3 [Arabidopsis thaliana] sp|Q949T8.1|ASHR3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR3; AltName: Full=ASH1-related protein 3; AltName: Full=Protein SET DOMAIN GROUP 4; AltName: Full=Protein stamen lo 9.0e-13
FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48593 SustainPine v3.0 448
AutoFact: PHD finger transcription factor-like protein [Oryza sativa Japonica Group] 3.0e-28
FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48934 SustainPine v3.0 202
AutoFact: Probable histone acetyltransferase HAC-like 1 n=4 Tax=Poaceae RepID=HACL1_ORYSJ 9.0e-34
FL-Next: sp=Probable histone acetyltransferase HAC-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Histone acetyltransferase 5.081e-14
Internal
sp_v3.0_unigene48996 SustainPine v3.0 279
AutoFact: Contains similarity to MLL protein from Fugu rubripes gb|AF036382, and contains a PWWP PF|00855 and a SET PF|00856 domain [Arabidopsis thaliana] 1.0e-15
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Sma3: SET domain protein 1.368e-06
Internal
sp_v3.0_unigene49368 SustainPine v3.0 211
AutoFact: putative methyltransferase PMT24 [Arabidopsis thaliana] ref|NP_001031109.1| putative methyltransferase PMT24 [Arabidopsis thaliana] sp|Q6NPR7.1|PMTO_ARATH RecName: Full=Probable methyltransferase PMT24 gb|AAR23721.1| At1g29470 [Arabidopsis thaliana] gb|AE 9.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 1.233e-18
Internal
sp_v3.0_unigene49608 SustainPine v3.0 1278
AutoFact: pfam00628, PHD, PHD-finger 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene50040 SustainPine v3.0 265
AutoFact: histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] sp|Q8GZ42.1|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5 1.0e-13
FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene51190 SustainPine v3.0 284
AutoFact: histone-lysine N-methyltransferase ATX3 [Arabidopsis thaliana] sp|Q9M364.2|ATX3_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX3; AltName: Full=Protein SET DOMAIN GROUP 14; AltName: Full=Trithorax-homolog protein 3; Short=TRX-homolog protein 3 3.0e-16
FL-Next: sp=Histone-lysine N-methyltransferase ATX3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Trithorax, putative 3.223e-09
Internal
sp_v3.0_unigene51394 SustainPine v3.0 401
AutoFact: PHD-finger, putative [Oryza sativa Japonica Group] gb|ABA92921.1| PHD-finger family protein, expressed [Oryza sativa Japonica Group] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene51776 SustainPine v3.0 315
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RCC0_RICCO 8.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene51843 SustainPine v3.0 312
AutoFact: RING/FYVE/PHD zinc finger-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4KE59_ARATH 6.0e-11
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene52032 SustainPine v3.0 371
AutoFact: Nuclear receptor binding set domain containing protein 1, nsd, putative n=1 Tax=Ricinus communis RepID=B9T6E1_RICCO 2.0e-20
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52076 SustainPine v3.0 131
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 3.0e-19
FL-Next: sp=Probable histone acetyltransferase HAC-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: p300/CBP acetyltransferase-related protein 1.895e-08
Internal
sp_v3.0_unigene52089 SustainPine v3.0 478
AutoFact: Unassigned protein
FL-Next: sp=PHD finger protein MALE STERILITY 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52123 SustainPine v3.0 291
AutoFact: p300/CBP acetyltransferase-related protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TAD6_PHYPA 9.0e-16
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: p300/CBP acetyltransferase-related protein 7.399e-09
C-terminus
sp_v3.0_unigene52184 SustainPine v3.0 101
AutoFact: Histone acetyltransferase HAC12 n=1 Tax=Arabidopsis thaliana RepID=F4I4I8_ARATH 6.0e-09
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: p300/CBP acetyltransferase-related protein 1.963e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain