Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene39692 SustainPine v3.0 141
• AutoFact: transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gb|AAK64062.1| putative RB-binding protein [Arabidopsis thaliana] gb|AAS46255.1| putative RB-binding protein [Arabidopsis thaliana] gb|AEE34105.1| transcription factor ju 3.0e-21
• FL-Next: Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 0.0
• Sma3: Jumonji domain protein 3.228e-20
Internal
sp_v3.0_unigene40974 SustainPine v3.0 1297
• AutoFact: RING/U-box protein [Arabidopsis thaliana] gb|AEE82949.1| RING/U-box protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene41867 SustainPine v3.0 236
• AutoFact: histone acetyltransferase HAC12 [Arabidopsis thaliana] sp|Q9FWQ5.2|HAC12_ARATH RecName: Full=Histone acetyltransferase HAC12 gb|AEE29487.1| histone acetyltransferase HAC12 [Arabidopsis thaliana] 3.0e-36
• FL-Next: sp=Histone acetyltransferase HAC12; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histone acetyltransferase 1.12e-13
Internal
sp_v3.0_unigene42111 SustainPine v3.0 123
• AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 3.0e-11
• FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
• Sma3: p300/CBP acetyltransferase-related protein 2.202e-08
Internal
sp_v3.0_unigene42444 SustainPine v3.0 1415
• AutoFact: Phd finger protein, putative n=1 Tax=Ricinus communis RepID=B9SP39_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SET domain protein 1.141e-12
Putative Complete
sp_v3.0_unigene42461 SustainPine v3.0 705
• AutoFact: Histone-lysine N-methyltransferase ASHR3 n=2 Tax=Arabidopsis RepID=ASHR3_ARATH 2.0e-15
• FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene42489 SustainPine v3.0 2222
• AutoFact: transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gb|AAK64062.1| putative RB-binding protein [Arabidopsis thaliana] gb|AAS46255.1| putative RB-binding protein [Arabidopsis thaliana] gb|AEE34105.1| transcription factor ju 0.0
• FL-Next: Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 0.0
• Sma3: Jumonji domain protein 8.967e-14
Putative C-terminus
sp_v3.0_unigene42517 SustainPine v3.0 1026
• AutoFact: PHD finger and bromo-adjacent homology domain-containing protein n=3 Tax=Arabidopsis RepID=F4JL28_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ebs-bah-phd domain-containing protein 6.898e-15
Complete
sp_v3.0_unigene42717 SustainPine v3.0 816
• AutoFact: Jumonji domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GWH9_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene42735 SustainPine v3.0 212
• AutoFact: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9SQW4_RICCO 2.0e-28
• FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20specific 1.113e-08
Internal
sp_v3.0_unigene42938 SustainPine v3.0 1264
• AutoFact: PREDICTED: similar to SNF2 histone linker PHD RING helicase [Gallus gallus] 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene42998 SustainPine v3.0 381
• AutoFact: trithorax, putative (EC:2.1.1.43) 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene44330 SustainPine v3.0 608
• AutoFact: p300/CBP acetyltransferase-related protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TAD6_PHYPA 4.0e-28
• FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
• Sma3: p300/CBP acetyltransferase-related protein 2.066e-10
Internal
sp_v3.0_unigene44331 SustainPine v3.0 315
• AutoFact: p300/CBP acetyltransferase-related protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3C0_PHYPA 1.0e-14
• FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Internal
sp_v3.0_unigene44382 SustainPine v3.0 1524
• AutoFact: putative DNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA Helicase 4.028e-21
C-terminus
sp_v3.0_unigene45775 SustainPine v3.0 301
• AutoFact: PHD-type zinc finger protein-like [Oryza sativa Japonica Group] gb|EAZ41192.1| hypothetical protein OsJ_25694 [Oryza sativa Japonica Group] 2.0e-21
• FL-Next: sp=PHD finger protein At3g20280; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene46022 SustainPine v3.0 1483
• AutoFact: Bromodomain protein n=2 Tax=Populus trichocarpa RepID=B9HH62_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division cycle protein 48 homolog 6.038e-11
Putative C-terminus
sp_v3.0_unigene46130 SustainPine v3.0 561
• AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
• FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chromatin remodeling complex subunit 3.709e-32
Internal
sp_v3.0_unigene46180 SustainPine v3.0 945
• AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 0.0
• FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene46312 SustainPine v3.0 356
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain