Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene16384 SustainPine v3.0 609
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 1.0e-37
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene17596 SustainPine v3.0 1875
AutoFact: Os01g0883900 protein n=3 Tax=Oryza sativa RepID=Q0JH49_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 9.634e-24
C-terminus
sp_v3.0_unigene19149 SustainPine v3.0 2987
AutoFact: Origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9RIC0_RICCO 0.0
FL-Next: tr=Origin recognition complex subunit, putative; Ricinus communis (Castor bean). 0.0
Sma3: Origin recognition complex 1 6.042e-09
Complete
sp_v3.0_unigene19201 SustainPine v3.0 2678
AutoFact: putative methyltransferase PMT3 [Arabidopsis thaliana] ref|NP_001031639.1| putative methyltransferase PMT3 [Arabidopsis thaliana] sp|Q93YV7.1|PMT3_ARATH RecName: Full=Probable methyltransferase PMT3 gb|AAL24095.1| putative ankyrin protein [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 5.512e-22
Complete
sp_v3.0_unigene19631 SustainPine v3.0 586
AutoFact: DNA replication regulator dpb11, putative n=1 Tax=Ricinus communis RepID=B9RNG3_RICCO 7.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene20486 SustainPine v3.0 2491
AutoFact: ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref|NP_974600.1| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref|NP_001078436.1| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] dbj|BAH30533.1| hypothetical protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Complete
sp_v3.0_unigene20836 SustainPine v3.0 281
AutoFact: Pyruvate kinase n=2 Tax=Picea sitchensis RepID=A9NUL1_PICSI 5.0e-24
FL-Next: sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pyruvate kinase 1.446e-39
N-terminus
sp_v3.0_unigene21029 SustainPine v3.0 782
AutoFact: Usp domain containing protein 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: USP family protein 4.444e-11
Complete
sp_v3.0_unigene21071 SustainPine v3.0 1476
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U1 small nuclear ribonucleoprotein 6.725e-12
Putative Complete
sp_v3.0_unigene22586 SustainPine v3.0 1437
AutoFact: Phd/F-box containing protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBF1_CUCME 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene22833 SustainPine v3.0 1606
AutoFact: PHD multi-domain protein 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene23639 SustainPine v3.0 4216
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0A5_RICCO 0.0
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Sma3: Putative uncharacterized protein At2g27980 1.062e-08
Putative Complete
sp_v3.0_unigene24972 SustainPine v3.0 572
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene25154 SustainPine v3.0 692
AutoFact: E3 SUMO-protein ligase SIZ1 n=3 Tax=Oryza sativa RepID=SIZ1_ORYSJ 2.0e-17
FL-Next: sp=E3 SUMO-protein ligase SIZ1; Oryza sativa subsp. japonica (Rice). 0.0
N-terminus
sp_v3.0_unigene25516 SustainPine v3.0 441
AutoFact: RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana] gb|AAF31272.1|AC006424_1 Location of EST 206I21T7, gb|N37185 [Arabidopsis thaliana] gb|AEE31531.1| RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana] 1.0e-22
FL-Next: sp=PHD finger protein At1g33420; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene27535 SustainPine v3.0 4308
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNH5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene28161 SustainPine v3.0 1594
AutoFact: homeobox protein HAT3.1 [Arabidopsis thaliana] sp|Q04996.3|HAT31_ARATH RecName: Full=Homeobox protein HAT3.1 dbj|BAC41784.1| putative homeobox protein HAT3.1 [Arabidopsis thaliana] gb|AAO64900.1| At3g19510 [Arabidopsis thaliana] gb|AEE76250.1| homeobox pr 0.0
FL-Next: sp=Homeobox protein HAT3.1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pathogenesis-related homeodomain protein 1.514e-08
N-terminus
sp_v3.0_unigene28175 SustainPine v3.0 4718
AutoFact: DNMT1-RFD multi-domain protein 9.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene28265 SustainPine v3.0 1001
AutoFact: protein alfin-like 6 [Arabidopsis thaliana] gb|AAM15031.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAO41953.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAO50537.1| putative PHD-type zinc finger protein [Arabi 6.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: PHD finger protein 1.746e-29
C-terminus
sp_v3.0_unigene28333 SustainPine v3.0 1036
AutoFact: protein alfin-like 6 [Arabidopsis thaliana] gb|AAM15031.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAO41953.1| putative PHD-type zinc finger protein [Arabidopsis thaliana] gb|AAO50537.1| putative PHD-type zinc finger protein [Arabi 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: PHD finger protein 1.746e-29
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain