Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene11994 SustainPine v3.0 1670
AutoFact: PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] dbj|BAD95354.1| receptor like protein [Arabidopsis thaliana] gb|AEE84563.1| PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ebs-bah-phd domain-containing protein 0.0
Complete
sp_v3.0_unigene12098 SustainPine v3.0 2280
AutoFact: ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref|NP_974600.1| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref|NP_001078436.1| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] dbj|BAH30533.1| hypothetical protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Complete
sp_v3.0_unigene12370 SustainPine v3.0 4956
AutoFact: Plus-3 multi-domain protein 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene12730 SustainPine v3.0 2835
AutoFact: DUF1423 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene12914 SustainPine v3.0 3152
AutoFact: mitogen activated protein kinase kinase [Oryza sativa Japonica Group] dbj|BAD31874.1| mitogen activated protein kinase kinase [Oryza sativa Japonica Group] gb|EAZ40375.1| hypothetical protein OsJ_24821 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: With no lysine kinase 7.00649e-44
Putative Complete
sp_v3.0_unigene13313 SustainPine v3.0 539
AutoFact: transcription cofactor, putative; K04498 E1A/CREB-binding protein [EC:2.3.1.48] 2.0e-15
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 5.167e-09
C-terminus
sp_v3.0_unigene13815 SustainPine v3.0 2537
AutoFact: putative methyltransferase PMT12 [Arabidopsis thaliana] sp|Q9FG39.1|PMTC_ARATH RecName: Full=Probable methyltransferase PMT12 dbj|BAB10206.1| ankyrin-like protein [Arabidopsis thaliana] gb|AAU05491.1| At5g06050 [Arabidopsis thaliana] gb|AAW80868.1| At5g06 0.0
FL-Next: sp=Probable methyltransferase PMT12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP binding protein, putative 9.476e-24
Complete
sp_v3.0_unigene13924 SustainPine v3.0 949
AutoFact: RecName: Full=Histone-lysine N-methyltransferase ASHH2; AltName: Full=ASH1 homolog 2; AltName: Full=H3-K4-HMTase; AltName: Full=Histone H3-K36 methyltransferase 8; Short=H3-K36-HMTase 8; AltName: Full=Protein EARLY FLOWERING IN SHORT DAYS; AltName: Full=P 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 4.218e-13
Putative C-terminus
sp_v3.0_unigene14118 SustainPine v3.0 2856
AutoFact: putative methyltransferase PMT20 [Arabidopsis thaliana] ref|NP_849736.1| putative methyltransferase PMT20 [Arabidopsis thaliana] ref|NP_973949.1| putative methyltransferase PMT20 [Arabidopsis thaliana] sp|Q9C6S7.1|PMTK_ARATH RecName: Full=Probable methylt 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 7.909e-20
Putative Complete
sp_v3.0_unigene14221 SustainPine v3.0 1311
AutoFact: male meiotic MMD1 PHD-finger protein [Arabidopsis thaliana] sp|Q7X6Y7.1|MMD1_ARATH RecName: Full=PHD finger protein MALE MEIOCYTE DEATH 1 gb|AAO16873.1| male meiotic MMD1 [Arabidopsis thaliana] gb|AAP69944.1| male meiotic chromosome organization protein [ 0.0
FL-Next: sp=PHD finger protein MALE MEIOCYTE DEATH 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene14356 SustainPine v3.0 962
AutoFact: C3HC4-type RING finger protein [Arabidopsis thaliana] gb|AEE79284.1| C3HC4-type RING finger protein [Arabidopsis thaliana] 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Inter-alpha-trypsin inhibitor heavy chain H3, putative 4.863e-08
Internal
sp_v3.0_unigene14381 SustainPine v3.0 2905
AutoFact: [R] COG5141 PHD zinc finger-containing protein 2.0e-33
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Putative Complete
sp_v3.0_unigene14455 SustainPine v3.0 480
AutoFact: Methyl-CpG-binding domain-containing protein 9 n=2 Tax=Arabidopsis RepID=MBD9_ARATH 9.99967e-42
FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene14552 SustainPine v3.0 670
AutoFact: PHD domain containing protein 6.0e-06
FL-Next: sp=PHD finger protein At2g01810; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene14932 SustainPine v3.0 1077
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 8.342e-10
Putative C-terminus
sp_v3.0_unigene15652 SustainPine v3.0 550
AutoFact: p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: Histone acetyltransferase 8.981e-14
Internal
sp_v3.0_unigene15686 SustainPine v3.0 1120
AutoFact: pfam03107, C1_2, C1 domain 8.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_137, whole genome shotgun sequence 1.155e-06
Complete
sp_v3.0_unigene15754 SustainPine v3.0 1003
AutoFact: DC1 domain-containing protein n=3 Tax=Arabidopsis RepID=F4HWC5_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_137, whole genome shotgun sequence 9.247e-07
Putative Complete
sp_v3.0_unigene15846 SustainPine v3.0 965
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 4.0e-13
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SNF2 family DNA-dependent ATPase 3.618e-06
N-terminus
sp_v3.0_unigene16140 SustainPine v3.0 2642
AutoFact: putative methyltransferase PMT2 [Arabidopsis thaliana] ref|NP_849710.1| putative methyltransferase PMT2 [Arabidopsis thaliana] sp|B9DFI7.2|PMT2_ARATH RecName: Full=Probable methyltransferase PMT2 gb|AAK59830.1| At1g26850/T2P11_4 [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 6.225e-24
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain