Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene8503 SustainPine v3.0 2014
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized protein At4g10930; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr2 scaffold_176, whole genome shotgun sequence 2.092e-07
C-terminus
sp_v3.0_unigene8523 SustainPine v3.0 777
AutoFact: p300/CBP acetyltransferase-related protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TAD6_PHYPA 5.0e-28
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Internal
sp_v3.0_unigene8714 SustainPine v3.0 1309
AutoFact: calmodulin-binding protein [Arabidopsis thaliana] gb|AAF28348.1| calmodulin-binding protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AAA ATPase, central region 3.222e-07
C-terminus
sp_v3.0_unigene8743 SustainPine v3.0 690
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 1.96182e-44
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 1.34e-08
C-terminus
sp_v3.0_unigene8878 SustainPine v3.0 2094
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SDZ8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ankyrin-like protein 2.804e-15
Putative Complete
sp_v3.0_unigene8936 SustainPine v3.0 924
AutoFact: histone-lysine N-methyltransferase ATXR6 [Arabidopsis thaliana] sp|Q9FNE9.1|ATXR6_ARATH RecName: Full=Histone-lysine N-methyltransferase ATXR6; AltName: Full=Protein SET DOMAIN GROUP 34; AltName: Full=Trithorax-related protein 6; Short=TRX-related protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine N-methyltransferase ATXR6, putative 6.584e-09
N-terminus
sp_v3.0_unigene9287 SustainPine v3.0 272
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 2.00386e-43
FL-Next: sp=Histone acetyltransferase HAC12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 1.397e-08
Internal
sp_v3.0_unigene9764 SustainPine v3.0 1161
AutoFact: PREDICTED: polybromo 1-like isoform 2 [Rattus norvegicus] ref|XP_240329.5| PREDICTED: polybromo 1 [Rattus norvegicus] 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
C-terminus
sp_v3.0_unigene9785 SustainPine v3.0 1453
AutoFact: PHD finger protein [Arabidopsis thaliana] sp|Q9C810.1|Y1342_ARATH RecName: Full=PHD finger protein At1g33420 gb|AAG51204.1|AC051630_1 hypothetical protein; 47104-44821 [Arabidopsis thaliana] gb|AAK59559.1| unknown protein [Arabidopsis thaliana] gb|AAK9373 0.0
FL-Next: sp=PHD finger protein At1g33420; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene9808 SustainPine v3.0 1125
AutoFact: BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TSM0_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ebs-bah-phd domain-containing protein 1.059e-14
Putative Complete
sp_v3.0_unigene9876 SustainPine v3.0 3404
AutoFact: putative serine/threonine-specific protein kinase [Oryza sativa Japonica Group] gb|EAZ41462.1| hypothetical protein OsJ_25984 [Oryza sativa Japonica Group] dbj|BAH00920.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Serine/threonine-specific protein kinase-like protein 3.733e-09
Complete
sp_v3.0_unigene10265 SustainPine v3.0 355
AutoFact: contains similarity to C3HC4-type zinc fingers (Pfam:zf-C3HC4.hmm, score: 34.87) [Arabidopsis thaliana] 5.0e-12
FL-Next: tr=F8M12.8 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene10317 SustainPine v3.0 1538
AutoFact: Serine/threonine-specific protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S9Z6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Somatic embryogenesis receptor kinase, putative 1.303e-09
Putative N-terminus
sp_v3.0_unigene10576 SustainPine v3.0 1197
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj|BAB03019.1| unnamed protein product [Arabidopsis thaliana] gb|AAM67115.1| PHD-finger protein, putative [Arabidopsis thaliana] gb|ABD94083.1| At3g24010 [Arabidopsis thaliana] dbj|BAH30 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene10598 SustainPine v3.0 2305
AutoFact: Peptidase M50 family protein [Arabidopsis thaliana] gb|AAK92744.1| unknown protein [Arabidopsis thaliana] gb|AAN71977.1| unknown protein [Arabidopsis thaliana] gb|AED93947.1| Peptidase M50 family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Genomic DNA, chromosome 5, TAC clone:K3D20 2.211e-08
Putative Complete
sp_v3.0_unigene10859 SustainPine v3.0 1629
AutoFact: PHD finger/nucleic acid binding protein [Olimarabidopsis pumila] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene11425 SustainPine v3.0 1761
AutoFact: BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TRM7_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ebs-bah-phd domain-containing protein 1.137e-14
Complete
sp_v3.0_unigene11437 SustainPine v3.0 444
AutoFact: Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM34_MARPO 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 2.582e-15
Internal
sp_v3.0_unigene11816 SustainPine v3.0 641
AutoFact: Histone acetyltransferase HAC1 n=4 Tax=Arabidopsis RepID=HAC1_ARATH 7.0e-30
FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 7.399e-09
C-terminus
sp_v3.0_unigene11828 SustainPine v3.0 2719
AutoFact: fimbrin-like protein 2 [Arabidopsis thaliana] sp|Q9FKI0.1|FIMB2_ARATH RecName: Full=Fimbrin-like protein 2 dbj|BAB09267.1| fimbrin [Arabidopsis thaliana] gb|AAK76454.1| putative fimbrin protein [Arabidopsis thaliana] gb|AAN13139.1| putative fimbrin protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fimbrin, putative 9.399e-13
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain