Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene148006 SustainPine v3.0 285
AutoFact: putative long-chain-alcohol O-fatty-acyltransferase 9 [Arabidopsis thaliana] sp|Q4PT07.1|WAXS9_ARATH RecName: Full=Probable long-chain-alcohol O-fatty-acyltransferase 9; AltName: Full=Wax synthase 9 gb|AAY78636.1| membrane bound O-acyl transferase family 3.0e-18
FL-Next: sp=Probable long-chain-alcohol O-fatty-acyltransferase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Acyltransferase, putative 7.307e-11
Internal
sp_v3.0_unigene148201 SustainPine v3.0 280
AutoFact: GYF domain containing protein 2.0e-11
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene148374 SustainPine v3.0 297
AutoFact: Unassigned protein
FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene148678 SustainPine v3.0 388
AutoFact: E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref|NP_001119465.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97324.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97328.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] 9.0e-21
FL-Next: Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 0.0
Internal
sp_v3.0_unigene148784 SustainPine v3.0 320
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N1U4_POPTR 1.0e-09
FL-Next: tr=Chromatin remodeling complex subunit; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene152798 SustainPine v3.0 234
AutoFact: Actin binding protein n=1 Tax=Polysphondylium pallidum RepID=D3BGE1_POLPA 6.0e-27
FL-Next: sp=Fimbrin-like protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Fimbrin, putative 3.849e-09
Internal
sp_v3.0_unigene153350 SustainPine v3.0 452
AutoFact: Actin bundling protein n=1 Tax=Polysphondylium pallidum RepID=D3B7A6_POLPA 3.00018e-42
FL-Next: sp=Fimbrin-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Fimbrin, putative 1.745e-08
Internal
sp_v3.0_unigene154151 SustainPine v3.0 259
AutoFact: similar to Human XE169 protein [Arabidopsis thaliana] 1.0e-13
FL-Next: sp=Probable lysine-specific demethylase JMJ14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Jumonji domain protein 6.128e-08
Internal
sp_v3.0_unigene154535 SustainPine v3.0 315
AutoFact: RAMP4 domain containing protein 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Membrane protein 3.845e-14
Complete
sp_v3.0_unigene154851 SustainPine v3.0 392
AutoFact: phd finger protein [Aedes aegypti] gb|EAT47302.1| phd finger protein [Aedes aegypti] 4.0e-20
FL-Next: sp=Histone-lysine N-methyltransferase ATX1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene155495 SustainPine v3.0 311
AutoFact: Actin binding protein n=1 Tax=Polysphondylium pallidum RepID=D3BGE1_POLPA 7.0e-36
FL-Next: sp=Fimbrin-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Fimbrin, putative 8.192e-13
Internal
sp_v3.0_unigene157368 SustainPine v3.0 392
AutoFact: PREDICTED: bromodomain-containing protein 1-like isoform 2 n=1 Tax=Anolis carolinensis RepID=UPI0001F99EB4 6.0e-27
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Internal
sp_v3.0_unigene158236 SustainPine v3.0 305
AutoFact: fimbrin-like protein AtFim2 [Arabidopsis thaliana] 2.0e-26
FL-Next: sp=Fimbrin-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Fimbrin, putative 2.505e-08
Internal
sp_v3.0_unigene159878 SustainPine v3.0 503
AutoFact: PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] dbj|BAD95354.1| receptor like protein [Arabidopsis thaliana] gb|AEE84563.1| PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ebs-bah-phd domain-containing protein 6.192e-15
C-terminus
sp_v3.0_unigene160813 SustainPine v3.0 247
AutoFact: Pyruvate kinase n=1 Tax=Picea sitchensis RepID=B8LLZ7_PICSI 1.0e-24
FL-Next: sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pyruvate kinase 4.814e-32
N-terminus
sp_v3.0_unigene161074 SustainPine v3.0 464
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKE6_VITVI 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene161610 SustainPine v3.0 271
AutoFact: methyl-CPG-binding domain 9 [Arabidopsis thaliana] sp|Q9SGH2.1|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9 2.0e-08
FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene161880 SustainPine v3.0 375
AutoFact: Similarity to 26S proteasome subunit 4 n=2 Tax=Arabidopsis thaliana RepID=Q9LIM2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bromodomain protein 2.082e-08
Internal
sp_v3.0_unigene164689 SustainPine v3.0 320
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 8.0e-36
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene165186 SustainPine v3.0 146
AutoFact: RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana] gb|AAF31272.1|AC006424_1 Location of EST 206I21T7, gb|N37185 [Arabidopsis thaliana] gb|AEE31531.1| RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana] 7.0e-10
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain