Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene106805 SustainPine v3.0 257
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATSMC2, putative 8.772e-06
Internal
sp_v3.0_unigene107663 SustainPine v3.0 291
AutoFact: Histone-lysine N-methyltransferase ATXR6, putative n=1 Tax=Ricinus communis RepID=B9RU15_RICCO 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 1.024e-09
C-terminus
sp_v3.0_unigene107941 SustainPine v3.0 305
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 4.143e-17
Internal
sp_v3.0_unigene110161 SustainPine v3.0 351
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SH81_RICCO 1.0e-39
FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene110554 SustainPine v3.0 481
AutoFact: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IA87_POPTR 0.0
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 0.0
Sma3: Trithorax-like protein, histone-lysine N-methyltransferase 2.541e-12
Internal
sp_v3.0_unigene110927 SustainPine v3.0 619
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 7.0e-33
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Sma3: Sister chromatid cohesion 2 8.772e-06
Internal
sp_v3.0_unigene110958 SustainPine v3.0 224
AutoFact: protein kinase family protein [Arabidopsis thaliana] dbj|BAB09338.1| serine/threonine-specific protein kinase-like protein [Arabidopsis thaliana] gb|AED96515.1| protein kinase family protein [Arabidopsis thaliana] 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-specific protein kinase-like protein 1.339e-07
Internal
sp_v3.0_unigene111111 SustainPine v3.0 243
AutoFact: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I5A8_POPTR 3.0e-27
FL-Next: sp=Histone-lysine N-methyltransferase ATX4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Trithorax, putative 1.362e-08
Internal
sp_v3.0_unigene113621 SustainPine v3.0 261
AutoFact: E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref|NP_001119465.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97324.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97328.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] 1.0e-10
FL-Next: sp=E3 SUMO-protein ligase SIZ1; Oryza sativa subsp. japonica (Rice). 0.0
Putative N-terminus
sp_v3.0_unigene114610 SustainPine v3.0 383
AutoFact: Jumonji domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GWH9_POPTR 4.00001e-41
FL-Next: Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 0.0
Putative N-terminus
sp_v3.0_unigene116218 SustainPine v3.0 131
AutoFact: Unassigned protein 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene118272 SustainPine v3.0 305
AutoFact: Unassigned protein
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Internal
sp_v3.0_unigene118295 SustainPine v3.0 270
AutoFact: DNA Helicase [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA Helicase 5.61e-08
Internal
sp_v3.0_unigene118341 SustainPine v3.0 325
AutoFact: SET domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I5A8_POPTR 3.0e-28
FL-Next: sp=Histone-lysine N-methyltransferase ATX4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SET domain protein 7.678e-06
Internal
sp_v3.0_unigene119610 SustainPine v3.0 530
AutoFact: p300/CBP acetyltransferase-related protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TAD6_PHYPA 0.0
FL-Next: sp=Probable histone acetyltransferase HAC-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Histone acetyltransferase 1.497e-13
Internal
sp_v3.0_unigene120862 SustainPine v3.0 576
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2Q5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ankyrin-like protein 6.791e-16
Internal
sp_v3.0_unigene120981 SustainPine v3.0 369
AutoFact: DNA Helicase [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent DNA helicase Q-like 4A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA helicase isolog 1.083e-08
Internal
sp_v3.0_unigene121133 SustainPine v3.0 176
AutoFact: methyl-CPG-binding domain 9 [Arabidopsis thaliana] sp|Q9SGH2.1|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9 4.0e-06
FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene121439 SustainPine v3.0 269
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9N1U4_POPTR 1.0e-18
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene123043 SustainPine v3.0 420
AutoFact: PHD-finger, putative [Oryza sativa Japonica Group] gb|ABA92921.1| PHD-finger family protein, expressed [Oryza sativa Japonica Group] 7.0e-16
FL-Next: sp=Histone-lysine N-methyltransferase ATXR6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain