Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene76619 SustainPine v3.0 321
AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene77014 SustainPine v3.0 216
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] gb|AEE75622.1| AAA-type ATPase family protein [Arabidopsis thaliana] 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bromodomain protein 1.238e-09
Internal
sp_v3.0_unigene77727 SustainPine v3.0 326
AutoFact: DUF1423 domain containing protein 5.99756e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein binding protein, putative 4.24e-06
Internal
sp_v3.0_unigene77762 SustainPine v3.0 339
AutoFact: histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] sp|Q8GZ42.1|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5 2.0e-27
FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Trithorax, putative 1.134e-08
Internal
sp_v3.0_unigene79034 SustainPine v3.0 196
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene79153 SustainPine v3.0 239
AutoFact: histone-lysine N-methyltransferase ASHR3 [Arabidopsis thaliana] sp|Q949T8.1|ASHR3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR3; AltName: Full=ASH1-related protein 3; AltName: Full=Protein SET DOMAIN GROUP 4; AltName: Full=Protein stamen lo 2.0e-19
FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79197 SustainPine v3.0 441
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA 0.0
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SNF2 family DNA-dependent ATPase 2.652e-06
Internal
sp_v3.0_unigene79356 SustainPine v3.0 381
AutoFact: histone-lysine N-methyltransferase ASHR3 [Arabidopsis thaliana] sp|Q949T8.1|ASHR3_ARATH RecName: Full=Histone-lysine N-methyltransferase ASHR3; AltName: Full=ASH1-related protein 3; AltName: Full=Protein SET DOMAIN GROUP 4; AltName: Full=Protein stamen lo 1.0e-25
FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79690 SustainPine v3.0 244
AutoFact: transcription cofactor, putative; K04498 E1A/CREB-binding protein [EC:2.3.1.48] 6.0e-14
FL-Next: sp=Histone acetyltransferase HAC12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: p300/CBP acetyltransferase-related protein 1.229e-08
Internal
sp_v3.0_unigene80234 SustainPine v3.0 141
AutoFact: DNA replication regulator dpb11, putative n=1 Tax=Ricinus communis RepID=B9RNG3_RICCO 1.0e-13
FL-Next: sp=BRCT domain-containing protein At4g02110; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene80801 SustainPine v3.0 284
AutoFact: putative methyltransferase PMT17 [Arabidopsis thaliana] sp|Q9SZX8.1|PMTH_ARATH RecName: Full=Probable methyltransferase PMT17 emb|CAB40037.1| putative protein [Arabidopsis thaliana] emb|CAB78167.1| putative protein [Arabidopsis thaliana] gb|AEE82883.1| pu 2.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ankyrin protein kinase-like 1.758e-18
Internal
sp_v3.0_unigene80979 SustainPine v3.0 206
AutoFact: Jumonji domain protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9GWH9_POPTR 5.0e-18
FL-Next: Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 0.0
Internal
sp_v3.0_unigene81497 SustainPine v3.0 90
AutoFact: PHD finger family protein [Arabidopsis thaliana] gb|AED93071.1| PHD finger family protein [Arabidopsis thaliana] 4.0e-09
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene81620 SustainPine v3.0 186
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Internal
sp_v3.0_unigene85817 SustainPine v3.0 294
AutoFact: Nop14 multi-domain protein 1.0e-10
coding
sp_v3.0_unigene87173 SustainPine v3.0 202
Sma3: SNF2 family DNA-dependent ATPase 1.552e-06
coding
sp_v3.0_unigene93612 SustainPine v3.0 1821
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 9.648e-28
Putative Complete
sp_v3.0_unigene94088 SustainPine v3.0 374
AutoFact: SET domain protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9IDM7_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine N-methyltransferase ATXR6, putative 6.584e-09
Putative C-terminus
sp_v3.0_unigene94218 SustainPine v3.0 314
AutoFact: RecQ-like helicase 2 [Oryza sativa Japonica Group] 9.80909e-45
FL-Next: Isoform 2 of Mediator of RNA polymerase II transcription subunit 34 OS=Arabidopsis thaliana GN=MED34 0.0
Sma3: DNA Helicase 1.082e-17
Internal
sp_v3.0_unigene94417 SustainPine v3.0 330
AutoFact: RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana] gb|AAF31272.1|AC006424_1 Location of EST 206I21T7, gb|N37185 [Arabidopsis thaliana] gb|AEE31531.1| RING/FYVE/PHD zinc finger protein [Arabidopsis thaliana] 7.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain