Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: Zinc finger, PHD-type

Term: IPR001965  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene70695 SustainPine v3.0 260
AutoFact: Pathogenesis-related homeodomain protein [Arabidopsis thaliana] sp|P48785.1|PRH_ARATH RecName: Full=Pathogenesis-related homeodomain protein; Short=PRHA gb|AAA32843.1| homeodomain protein [Arabidopsis thaliana] gb|AAC49836.1| PRHA [Arabidopsis thaliana] e 5.0e-29
FL-Next: sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pathogenesis-related homeodomain protein 1.612e-08
Internal
sp_v3.0_unigene71193 SustainPine v3.0 214
AutoFact: Os06g0187000 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0DDZ5_ORYSJ 2.0e-09
FL-Next: tr=Origin recognition complex 1; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene71534 SustainPine v3.0 289
AutoFact: Inhibitor of growth protein, putative n=1 Tax=Ricinus communis RepID=B9RWQ1_RICCO 7.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene71814 SustainPine v3.0 118
AutoFact: Histone-lysine N-methyltransferase n=3 Tax=Andropogoneae RepID=C5XT28_SORBI 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 2.652e-10
Internal
sp_v3.0_unigene72630 SustainPine v3.0 262
AutoFact: putative collagen [Oryza sativa Japonica Group] gb|ABF98555.1| PHD-finger family protein, expressed [Oryza sativa Japonica Group] gb|EAY91653.1| hypothetical protein OsI_13292 [Oryza sativa Indica Group] 8.0e-14
FL-Next: sp=PHD finger protein MALE STERILITY 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene72686 SustainPine v3.0 315
AutoFact: DNA binding / nucleic acid binding / protein binding / zinc ion binding 3.0e-18
FL-Next: sp=Zinc finger CCCH domain-containing protein 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72765 SustainPine v3.0 280
AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RDV9_PHYPA 1.0e-29
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene72970 SustainPine v3.0 181
AutoFact: PHD domain containing protein 2.0e-05
FL-Next: sp=PHD finger protein At2g01810; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene73122 SustainPine v3.0 167
AutoFact: ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref|NP_974600.1| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] ref|NP_001078436.1| ubiquitin-protein ligase UBR7 [Arabidopsis thaliana] dbj|BAH30533.1| hypothetical protein [Arabidopsis thaliana] 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene73229 SustainPine v3.0 237
AutoFact: ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] gb|AAQ82841.1| At3g43240 [Arabidopsis thaliana] gb|AEE77778.1| ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] 5.0e-30
FL-Next: sp=AT-rich interactive domain-containing protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ARID/BRIGHT DNA-binding domain-containing protein 4.193e-08
Internal
sp_v3.0_unigene73703 SustainPine v3.0 470
AutoFact: RecName: Full=Helicase SWR1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.257e-38
Internal
sp_v3.0_unigene73756 SustainPine v3.0 181
AutoFact: Unassigned protein 6.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene74863 SustainPine v3.0 268
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene75166 SustainPine v3.0 137
AutoFact: AAA ATPase; ABC transporter, transmembrane region, type 1 [Medicago truncatula] 4.0e-15
FL-Next: sp=ABC transporter D family member 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75376 SustainPine v3.0 286
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA 8.0e-19
FL-Next: sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75692 SustainPine v3.0 356
AutoFact: PREDICTED: PHD and RING finger domain-containing protein 1 [Equus caballus] 8.0e-09
FL-Next: sp=Methyl-CpG-binding domain-containing protein 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene75700 SustainPine v3.0 283
AutoFact: BAH-PHD domain-containing protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TSM0_PHYPA 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ebs-bah-phd domain-containing protein 3.605e-15
Putative C-terminus
sp_v3.0_unigene76263 SustainPine v3.0 260
AutoFact: Similarity to 26S proteasome subunit 4 n=2 Tax=Arabidopsis thaliana RepID=Q9LIM2_ARATH 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bromodomain-containing protein 1.959e-06
Internal
sp_v3.0_unigene76471 SustainPine v3.0 240
AutoFact: fimbrin-like protein 2 [Arabidopsis thaliana] sp|Q9FKI0.1|FIMB2_ARATH RecName: Full=Fimbrin-like protein 2 dbj|BAB09267.1| fimbrin [Arabidopsis thaliana] gb|AAK76454.1| putative fimbrin protein [Arabidopsis thaliana] gb|AAN13139.1| putative fimbrin protei 1.0e-14
FL-Next: sp=Fimbrin-like protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Fimbrin, putative 4.732e-09
Internal
sp_v3.0_unigene76542 SustainPine v3.0 264
AutoFact: HAT 3.1 [Arabidopsis thaliana] 1.0e-24
FL-Next: sp=Homeobox protein HAT3.1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain