Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: intracellular protein transport

Term: GO:0006886  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene183761 SustainPine v3.0 514
AutoFact: AP-2 complex subunit mu-1 [Arabidopsis thaliana] ref|XP_002865173.1| clathrin adaptor complexes medium subunit family protein [Arabidopsis lyrata subsp. lyrata] gb|AAB88283.1| AP47/50p [Arabidopsis thaliana] dbj|BAB08907.1| AP47/50p [Arabidopsis thaliana] 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene183808 SustainPine v3.0 511
AutoFact: Coatomer subunit beta-1 n=7 Tax=Poaceae RepID=COPB1_ORYSJ 3.00018e-42
FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Coatomer subunit beta 6.528e-13
C-terminus
sp_v3.0_unigene183976 SustainPine v3.0 582
AutoFact: Unassigned protein
FL-Next: sp=VHS domain-containing protein At3g16270; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene184544 SustainPine v3.0 558
AutoFact: 26S protease regulatory subunit 8 n=7 Tax=Eukaryota RepID=F4W633_9HYME 0.0
FL-Next: tr=26S proteasome regulatory subunit 8; Pinus taeda (Loblolly pine). 0.0
Sma3: Proteasomal ATPase 2.993e-14
C-terminus
sp_v3.0_unigene184652 SustainPine v3.0 387
AutoFact: RecName: Full=Alpha-soluble NSF attachment protein; Short=Alpha-SNAP; AltName: Full=N-ethylmaleimide-sensitive factor attachment protein alpha gb|AAF37280.1|AF225512_1 soluble NSF attachment protein [Solanum tuberosum] 2.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alpha-soluble NSF attachment protein 8.846e-16
N-terminus
sp_v3.0_unigene184676 SustainPine v3.0 396
AutoFact: putative AP3-complex beta-3A adaptin subunit [Arabidopsis thaliana] 2.0e-09
FL-Next: sp=AP3-complex subunit beta-A; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene184962 SustainPine v3.0 499
AutoFact: B3 domain-containing transcription repressor VAL2 [Arabidopsis thaliana] sp|Q5CCK4.1|VAL2_ARATH RecName: Full=B3 domain-containing transcription repressor VAL2; AltName: Full=Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE-LIKE 1; AltName: Full=Protein V 5.0e-38
FL-Next: tr=VP1/ABI3-like protein; Callitropsis nootkatensis. 0.0
Sma3: Transcription factor, putative 9.846e-07
Internal
sp_v3.0_unigene186284 SustainPine v3.0 286
AutoFact: Unassigned protein 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene186643 SustainPine v3.0 601
AutoFact: AP-3 complex subunit sigma-2 [Danio rerio] ref|NP_001187290.1| AP-3 complex subunit sigma-2 [Ictalurus punctatus] gb|AAH76269.1| Zgc:92795 [Danio rerio] gb|ADO28452.1| AP-3 complex subunit sigma-2 [Ictalurus punctatus] 3.99931e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative Clathrin Coat Assembly protein 1.091e-08
C-terminus
sp_v3.0_unigene186908 SustainPine v3.0 466
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.7e-21
Putative Complete
sp_v3.0_unigene187353 SustainPine v3.0 274
AutoFact: Unassigned protein
FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Retrotransposon protein, putative, unclassified 9.658e-23
Internal
sp_v3.0_unigene189712 SustainPine v3.0 367
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, unclassified 3.533e-23
Internal
sp_v3.0_unigene190180 SustainPine v3.0 414
AutoFact: 26S protease regulatory subunit 6B homolog n=4 Tax=Dictyosteliida RepID=PRS6B_DICDI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Proteasomal ATPase 3.911e-14
Putative C-terminus
sp_v3.0_unigene191229 SustainPine v3.0 444
AutoFact: putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Coatomer subunit beta 6.528e-13
Putative C-terminus
sp_v3.0_unigene191875 SustainPine v3.0 484
AutoFact: Small GTP-binding protein domain containing protein n=2 Tax=Tetrahymena thermophila RepID=Q23R52_TETTH 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene193330 SustainPine v3.0 506
AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U389_PHYPA 0.0
FL-Next: sp=AP-4 complex subunit sigma; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene193370 SustainPine v3.0 460
AutoFact: AP-2 complex subunit sigma n=2 Tax=Dictyosteliida RepID=AP2S_DICDI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative clathrin assembly protein 4.793e-11
Putative Complete
sp_v3.0_unigene194084 SustainPine v3.0 284
AutoFact: Qa-SNARE, SYP4/Tlg2p/Syntaxin 16-type n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RUD3_PHYPA 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene194651 SustainPine v3.0 284
AutoFact: RecName: Full=Vacuolar protein sorting-associated protein 41 homolog gb|AAB60857.1| VPS41 [Solanum lycopersicum] 6.0e-23
FL-Next: sp=Vacuolar protein sorting-associated protein 41 homolog; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Vacuolar protein sorting-associated protein 41 homolog 4.688e-09
Internal
sp_v3.0_unigene196224 SustainPine v3.0 546
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 4.0e-10
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Coatomer subunit alpha-2 1.803e-08
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain