Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2531 SustainPine v3.0 2694
AutoFact: Cationic amino acid transporter n=1 Tax=Populus trichocarpa RepID=B9IPU4_POPTR 0.0
FL-Next: tr=Cationic amino acid transporter; subsp. trichocarpa). 0.0
Sma3: Putative cationic amino acid transporter 1.66e-11
Complete
sp_v3.0_unigene2551 SustainPine v3.0 1169
AutoFact: Putative multidrug resistance protein n=8 Tax=Poaceae RepID=MDR_ORYSJ 0.0
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
C-terminus
sp_v3.0_unigene2604 SustainPine v3.0 4075
AutoFact: Putative callose synthase catalytic subunit n=1 Tax=Gossypium hirsutum RepID=Q9XEG1_GOSHI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 1,3-beta-glucan synthase 3.125e-37
Putative Complete
sp_v3.0_unigene2612 SustainPine v3.0 3346
AutoFact: RecName: Full=Cyclin-T1-3; Short=CycT1;3 gb|AAX92940.1| Cyclin, N-terminal domain, putative [Oryza sativa Japonica Group] gb|EEC67709.1| hypothetical protein OsI_35185 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CycT1 1.254e-34
Complete
sp_v3.0_unigene2665 SustainPine v3.0 2071
AutoFact: DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana] sp|Q84TG1.1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57 gb|AAO64768.1| At3g09720 [Arabidopsis thaliana] dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana] gb|A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 57 5.167e-09
Complete
sp_v3.0_unigene2703 SustainPine v3.0 3503
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2738 SustainPine v3.0 1220
AutoFact: zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] ref|NP_850780.1| zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] sp|Q9FNG6.1|C3H51_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 51; Short=AtC3H51 d 0.0
FL-Next: sp=Zinc finger CCCH domain-containing protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RING finger protein 113A, putative 8.985e-09
Putative Complete
sp_v3.0_unigene2744 SustainPine v3.0 1476
AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein n=3 Tax=Arabidopsis RepID=F4JP86_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA methyltransferase 4.711e-09
Putative C-terminus
sp_v3.0_unigene2763 SustainPine v3.0 2135
AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 5.401e-22
C-terminus
sp_v3.0_unigene2826 SustainPine v3.0 2704
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 53; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 7 1.011e-10
Complete
sp_v3.0_unigene2832 SustainPine v3.0 2566
AutoFact: RNA-binding protein [Arabidopsis thaliana] gb|AAK52994.1|AF375410_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK56266.1|AF367277_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK06847.1| VirF-interacting protein FIP1 [Arabidopsis thaliana] gb|AAL0708 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Lupus la ribonucleoprotein, putative 2.064e-10
Complete
sp_v3.0_unigene2844 SustainPine v3.0 1344
AutoFact: Ribosomal protein n=8 Tax=Spermatophyta RepID=B7F9R7_ORYSJ 0.0
FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L1 0.0
Complete
sp_v3.0_unigene2849 SustainPine v3.0 1875
AutoFact: agenet domain-containing protein [Arabidopsis thaliana] gb|AAY34173.1| At1g09320 [Arabidopsis thaliana] gb|AEE28429.1| agenet domain-containing protein [Arabidopsis thaliana] 7.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2855 SustainPine v3.0 312
AutoFact: Polyribonucleotide phophorylase (Fragment) n=1 Tax=Spinacia oleracea RepID=Q41370_SPIOL 1.0e-31
FL-Next: tr=Polyribonucleotide nucleotidyltransferase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: Polynucleotide phosphorylase 1.122e-08
Internal
sp_v3.0_unigene2917 SustainPine v3.0 1723
AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2918 SustainPine v3.0 550
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.156e-11
C-terminus
sp_v3.0_unigene2920 SustainPine v3.0 1489
AutoFact: root-specific metal transporter [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Metal transporter, putative 2.407e-12
C-terminus
sp_v3.0_unigene2925 SustainPine v3.0 1490
AutoFact: mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] dbj|BAC43684.1| unknown protein [Arabidopsis thaliana] gb|AAO63396.1| At5g13570 [Arabidopsis thaliana] gb|AED91912.1| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: mRNA decapping protein 2 2.643e-09
Complete
sp_v3.0_unigene2927 SustainPine v3.0 1831
AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene2949 SustainPine v3.0 2074
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM20100.1| putative RNA-binding protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 3.03e-11
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain