Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene729 SustainPine v3.0 1589
AutoFact: Putative tRNA/rRNA methyltransferase n=3 Tax=Oryza sativa RepID=Q5JKV8_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene798 SustainPine v3.0 1646
AutoFact: gamma-secretase subunit APH1-like protein [Arabidopsis thaliana] sp|Q8L9G7.2|APH1_ARATH RecName: Full=Gamma-secretase subunit APH1-like gb|AAL36063.1| At2g31440/T28P16.7 [Arabidopsis thaliana] gb|AAD26475.2| unknown protein [Arabidopsis thaliana] gb|AAM19 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene803 SustainPine v3.0 3421
AutoFact: Sphingosine kinase n=1 Tax=Lotus japonicus RepID=Q5KR50_LOTJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene859 SustainPine v3.0 1818
AutoFact: oligoribonuclease [Arabidopsis thaliana] sp|Q9ZVE0.2|ORN_ARATH RecName: Full=Oligoribonuclease gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gb|AEC07912.1| oligoribonuclease [Arabidopsis thalia 0.0
FL-Next: sp=Oligoribonuclease; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Oligoribonuclease 2.166e-09
Complete
sp_v3.0_unigene939 SustainPine v3.0 839
AutoFact: Mpp10 multi-domain protein 3.0e-06
coding
sp_v3.0_unigene951 SustainPine v3.0 2178
AutoFact: Abscisic acid receptor PYR1 n=1 Tax=Fragaria x ananassa RepID=F2YHU9_FRAAN 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AT-rich element binding factor 3 4.978e-16
Complete
sp_v3.0_unigene954 SustainPine v3.0 2283
AutoFact: Serine/threonine protein kinase, putative n=1 Tax=Ricinus communis RepID=B9SJP9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine protein kinase, putative 2.846e-18
Complete
sp_v3.0_unigene980 SustainPine v3.0 1101
AutoFact: Plastid RNA-binding protein n=1 Tax=Nicotiana benthamiana RepID=D6QX33_NICBE 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative uncharacterized protein At3g48500 5.819e-10
N-terminus
sp_v3.0_unigene981 SustainPine v3.0 1987
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene985 SustainPine v3.0 1838
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S466_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 18 1.229e-08
Putative C-terminus
sp_v3.0_unigene995 SustainPine v3.0 1400
AutoFact: AKAP7_NLS domain containing protein 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6 9.234e-09
C-terminus
sp_v3.0_unigene1010 SustainPine v3.0 1742
AutoFact: Endonuclease/exonuclease/phosphatase family protein-like n=2 Tax=Oryza sativa RepID=Q5ZE24_ORYSJ 6.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene1103 SustainPine v3.0 1673
AutoFact: alpha-L-fucosidase 3 [Arabidopsis thaliana] sp|Q9FXE5.1|FUCO3_ARATH RecName: Full=Alpha-L-fucosidase 3; AltName: Full=Alpha-1,2-fucosidase; Short=AtFXG1; AltName: Full=Alpha-L-fucoside fucohydrolase 3; Flags: Precursor gb|AAG28886.1|AC008113_2 F12A21.4 [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alpha-L-fucosidase 2, putative 7.086e-20
Complete
sp_v3.0_unigene1106 SustainPine v3.0 1183
AutoFact: Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alkaline alpha galactosidase 1.988e-12
C-terminus
sp_v3.0_unigene1112 SustainPine v3.0 604
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tetratricopeptide-like helical 2.548e-09
Internal
sp_v3.0_unigene1128 SustainPine v3.0 1486
AutoFact: Chain B, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1198 SustainPine v3.0 1590
AutoFact: Cinnamoyl CoA reductase n=7 Tax=Populus RepID=B2Z6Q2_POPTR 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
Sma3: Cinnamoyl-CoA reductase 1.4013e-45
Complete
sp_v3.0_unigene1225 SustainPine v3.0 2360
AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.554e-35
Putative Complete
sp_v3.0_unigene1235 SustainPine v3.0 3833
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1249 SustainPine v3.0 2438
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr13 scaffold_120, whole genome shotgun sequence 1.488e-14
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain