Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene193472 SustainPine v3.0 586
• AutoFact: 40S ribosomal protein S3 [Danio rerio] gb|AAH45902.1| Ribosomal protein S3 [Danio rerio] gb|AAI65099.1| Rps3 protein [Danio rerio] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.072e-10
C-terminus
sp_v3.0_unigene193645 SustainPine v3.0 405
• AutoFact: rRNA 2'-O-methyltransferase fibrillarin n=6 Tax=Tetrapoda RepID=FBRL_XENLA 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.134e-08
C-terminus
sp_v3.0_unigene193677 SustainPine v3.0 421
• AutoFact: ATP-binding cassette transporter, subfamily B, member 6, group TAP protein PpABCB6 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TRT8_PHYPA 5.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
Putative C-terminus
sp_v3.0_unigene193698 SustainPine v3.0 372
• AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene193968 SustainPine v3.0 570
• AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 2.0e-39
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.18e-18
C-terminus
sp_v3.0_unigene194004 SustainPine v3.0 163
• AutoFact: Cytochrome b n=301 Tax=Magnoliophyta RepID=CYB_ARATH 8.0e-25
• FL-Next: sp=Cytochrome b6; Cathaya argyrophylla. Plastid; Chloroplast. 0.0
• Sma3: Cytochrome b 2.245e-15
Internal
sp_v3.0_unigene194161 SustainPine v3.0 633
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa Japonica Group RepID=Q2R4I0_ORYSJ 7.0e-28
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene194254 SustainPine v3.0 506
• AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 1.00053e-42
• FL-Next: tr=Retrotransposon protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.18505e-41
Internal
sp_v3.0_unigene194551 SustainPine v3.0 351
unknown
sp_v3.0_unigene194879 SustainPine v3.0 420
• AutoFact: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9R7N6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Multidrug resistance pump, putative 7.00649e-44
Internal
sp_v3.0_unigene194909 SustainPine v3.0 762
• AutoFact: Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] 4.0e-12
• FL-Next: sp=Exosome complex exonuclease RRP46 homolog; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene195211 SustainPine v3.0 326
• AutoFact: Unassigned protein 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene195459 SustainPine v3.0 262
• AutoFact: ubiquitin ligase protein cop1, putative (EC:1.3.1.74); K10143 E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19] 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 8.451e-11
Internal
sp_v3.0_unigene195493 SustainPine v3.0 370
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene195550 SustainPine v3.0 467
• AutoFact: Os07g0434200 protein (Fragment) n=2 Tax=Oryza sativa RepID=Q0D6W3_ORYSJ 9.0e-29
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Putative pol polyprotein 1.977e-09
C-terminus
sp_v3.0_unigene195596 SustainPine v3.0 187
• AutoFact: cytochrome P450 [Pyrus communis] 5.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome P450 3.205e-15
Internal
sp_v3.0_unigene195604 SustainPine v3.0 456
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 2.0e-31
• FL-Next: tr=Putative non-LTR retroelement reverse transcriptase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative non-LTR retroelement reverse transcriptase 2.784e-06
Internal
sp_v3.0_unigene195678 SustainPine v3.0 399
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g30700; AltName: Full=Protein DYW9 emb|CAB52443.1| putative protein [Arabidopsis thaliana] emb|CAB79788 2.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 3.153e-31
C-terminus
sp_v3.0_unigene195741 SustainPine v3.0 257
• AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene195762 SustainPine v3.0 413
• AutoFact: Sterol desaturase [Medicago truncatula] 5.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_268, whole genome shotgun sequence 8.507e-11
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain